1SDD


Conserved Protein Domain Family
CuRO_1_FV_like

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cd04226: CuRO_1_FV_like 
Click on image for an interactive view with Cn3D
The first cupredoxin domain of coagulation factor VIII and similar proteins
Factor V is an essential coagulation protein with both pro- and anti-coagulant functions. Aberrant expression of human factor V can lead to bleeding or thromboembolic disease, which may be life-threatening. Bovine factor Va serves as the cofactor in the prothrombinase complex that results in a 300,000-fold increase in the rate of thrombin generation. Factor V is synthesized as a single polypeptide with six cupredoxin domains and a domain structure of 1-2-3-4-B-5-6-C1-C2, where 1-6 are cupredoxin domains, B is a domain with no known structural homologs and is dispensible for coagulant activity, and C are domains distantly related to discoidin protein-fold family members. Factor V has little activity prior to proteolytic cleavage by thrombin or FXa upon secretion. The resulting Factor Va is a heterodimer consisting of a heavy chain (1-2-3-4) and a light chain (5-6-C1-C2). This model represents the cupredoxin domain 1 of unprocessed Factor V or the heavy chain of Factor Va, and similar proteins including pseutarin C non-catalytic subunit. Pseutarin C is a prothrombin activator from Pseudonaja textilis venom.
Statistics
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PSSM-Id: 259888
Aligned: 5 rows
Threshold Bit Score: 319.112
Created: 4-Jun-2012
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
metal bindingheterodimerDomain 2
Conserved site includes 4 residues -Click on image for an interactive view with Cn3D
Feature 1:metal binding site [ion binding site]
Evidence:
  • Structure:1SDD; Bos taurus Factor Vai binds a single calcium.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                         
1SDD_A          4 RQFYVAAQSIRWNYrpesthl-sskpfetSFKKIVYREYEAYFqkekpqsRTSGLLGPTLYAEVGDIMKVHFKNKAHKPL 82   cow
NP_001007209   28 RHYYIAAVNINWDYtsgqq------rtgqSYKKVVYREYNEGFkqpkahpLSSGLLGPTLRGQEGDTIIVTFRNMADHPC 101  zebrafish
XP_002935820   32 REYYIAAVITDWSYtnqyh-----dssefLYKKIIYREYEEGFqkakpavEYSGILGPTLRAEVGDILQVHFKNMANKPL 106  western clawe...
XP_001231901   32 REHYIAAQFTVWTYkpeseeksrlthldpVFKKISYREYEVDFkkekpadKSTGLLGPTLRAEVGDTLVVHFKNMADKPI 111  chicken
Q7SZN0         34 REYHIAAQLEDWDYnpqpeelsrlsesdlTFKKIVYREYELDFkqeeprdALSGLLGPTLRGEVGDSLIIYFKNFATQPV 113  Pseudonaja te...
Feature 1                   #              #  ##                                                  
1SDD_A         83 SIHAQGIKYSKFSEGASYSDHTLpmEKMDDAVAPGQEYTYEWIISEHSGPThDDPPCLTHIYYSYVNLVEDFNSGLIGPL 162  cow
NP_001007209  102 SLHPHGIAYGKQSEGSLYFDNTSllEKNDDVIQPGEEHTYQWDVTSDVTPTaADPPCITYTYLSHFDIVRDYNTGLIGPM 181  zebrafish
XP_002935820  107 TIHPQGVAYGKKSEGAKYTDSTLpyEKLDDSVMPGQMYTYIWEITEEIGPKeYDPACLTNIYYSHENMVQDFNSGLIGAL 186  western clawe...
XP_001231901  112 SIHPQGLVYNKKAEGSLYADRTShvEKQDDAVLPGQVYTYVWDITEEVGPReADLPCLTYAYYSHENMVMDFNSGLIGAL 191  chicken
Q7SZN0        114 SIHPQSAVYNKWSEGSSYSDGTSdvERLDDAVPPGQSFKYVWNITAEIGPKkADPPCLTYAYYSHVNMVRDFNSGLIGAL 193  Pseudonaja te...
Feature 1               
1SDD_A        163 LICKKG 168  cow
NP_001007209  182 LICKKG 187  zebrafish
XP_002935820  187 LICKKG 192  western clawed frog
XP_001231901  192 LICKKG 197  chicken
Q7SZN0        194 LICKEG 199  Pseudonaja textilis

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