Conserved Protein Domain Family
Cupredoxin_like_2

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cd04211: Cupredoxin_like_2 
Uncharacterized Cupredoxin-like subfamily
Cupredoxins contain type I copper centers and are involved in inter-molecular electron transfer reactions. Cupredoxins are blue copper proteins because they have an intense blue color due to the presence of a mononuclear type 1 (T1) copper site. Structurally, the cupredoxin-like fold consists of a beta-sandwich with 7 strands in 2 beta-sheets, which is arranged in a Greek-key beta-barrel. Some of these proteins have lost the ability to bind copper. Majority of family members contain multiple cupredoxin domain repeats; ceruloplasmin and coagulation factors V/VIII have six repeats; Laccase, ascorbate oxidase, and spore coat protein A, and multicopper oxidase CueO contain three repeats; and nitrite reductase has two repeats. Others are mono-domain cupredoxins, such as plastocyanin, pseudoazurin, plantacyanin, azurin, rusticyanin, stellacyanin, quinol oxidase and the periplasmic domain of cytochrome c oxidase subunit II.
Statistics
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PSSM-Id: 259873
Aligned: 17 rows
Threshold Bit Score: 140.123
Created: 30-Jan-2013
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putative Type 1
Feature 1: putative Type 1 (T1) Cu binding site [ion binding site], 4 residue positions
Conserved feature residue pattern:H C H MClick to see conserved feature residue pattern help
Evidence:
  • Comment:predicted based on homologous protein.
  • Comment:Type 1 (T1) copper sites are characterized by their conserved H...C...H...M copper ligands.
  • Comment:Some members bind copper at the T1 site with three amino acid residues (HCH), instead of four (HCHM).
  • Citation:PMID 2716059

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                  #                                     
YP_001188142  52 DRTIEIRMTDq----mRFTPDRLQVRQGETIRFVHHNdGKILHEFVIGTRETLDEHaeaml------------rfpgMEH 115 Pseudomonas men...
YP_001411628  68 TRTVEIEASDi-----KFDTAGLTFEAGETVRFVVVNnGEQPHEFTIGDADYQETArrmmthmtemgmdpvapehaaMHA 142 Parvibaculum la...
YP_145678     47 TRTVDVTMNDt----mRFSPDAIPVKAGDTIRFQVRNaGMIEHEMVIGTTAELKEHakmmr------------emagEKH 110 Ralstonia metal...
YP_411275     38 SRTVEITAVDn-----RFKPDAIKVKQGETIKFLITNlGKKKHEMMIGTAEEIDKHgkmlk-----------khpdhAHP 101 Nitrosospira mu...
YP_165195     56 NRTIKVTMSEtddgemIYTPKDFDIKKGETIRFMVTNkGELEHEFILDTVERNAMHkeam-------------sqqmESH 122 Silicibacter po...
NP_356651     42 TQTIQVTMKEtpdgkmMFTPAKFEFKKGKTVRFAVKNvGELDHEFILDEQKANLEHkavma------------kapeMEH 109 Agrobacterium t...
YP_434213     48 SRTIEIKATDa----mKFEPGAIDVKAGETVKLVITNvGQVRHEFSVGTQQEHKAHgemmr------------ampdMKH 111 Hahella chejuen...
NP_768849     53 ARTVEIAMSEm-----SYEPSNITVERGEQIRFVLRNsGKEDHEFLLATTKENLEHaevmk------------khphMEH 115 Bradyrhizobium ...
AAF32271      65 SRTIDLSMDDt----mRFTPKSISVKQGETIRFFIKNnGKLPHEFVLGTTSELKEHagmmqq----------mqgmqMQH 130 Aeromonas veron...
YP_129215     69 TQTIQVSLSDdm---kLKFEPSLNLKQGDIVRFVIINnGQIPHEFSIGSIDEQKKHrdmmr------------smpnMEH 133 Photobacterium ...
Feature 1                                     #    #        #      
YP_001188142 116 DEPYMAHVAPGQSGEMIWTFnraGEFDFACLIAGHYq----aGMVGTIQV 161 Pseudomonas mendocina ymp
YP_001411628 143 PAGNTVTLDIGETKEIVWTFtkaGTFEFSCNIPGHSe----vGMKGTIAV 188 Parvibaculum lavamentivorans DS-1
YP_145678    111 AAPNKLTLAPGAQGTLVWRFekpGTVDFACLVPGHFe----aGMVGKVVV 156 Ralstonia metallidurans CH34
YP_411275    102 DQPDMVSVEPGQTGELVWHFteaGTVNFACPLPGHFkgmnfpGMKGTITV 151 Nitrosospira multiformis ATCC 25196
YP_165195    123 QSPNAITLEPGKKGEIIWTFgnpGTFEVACLIPGHYe----sGMFGKVAV 168 Silicibacter pomeroyi DSS-3
NP_356651    110 DNPNAISLAPGESGEIVWKFtndGMFEFACLKPGHYe----aGMRGDLKV 155 Agrobacterium tumefaciens str. C58
YP_434213    112 DDGASVSLEPGESREIIWTFasaGTFEMACNIPGHYe----aGMHGDVTV 157 Hahella chejuensis KCTC 2396
NP_768849    116 DDPNGVRLAPSKTAEILWKFskaGTFEFSCLIPDHRd----yGMVGHVTV 161 Bradyrhizobium japonicum USDA 110
AAF32271     131 SMPNMISLAPNQKSAVLWKFdksGTVSFACLVPGHMe----aGMVGEVVV 176 Aeromonas veronii bv. sobria
YP_129215    134 SDGSTISLKSGEKGEITWHFmgqPFVEVACNIPGHAe----aGMKMNFVL 179 Photobacterium profundum SS9

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