1WDT


Conserved Protein Domain Family
EF-G_bact

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cd04170: EF-G_bact 
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Elongation factor G (EF-G) family
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group contains only bacterial members.
Statistics
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PSSM-Id: 206733
Aligned: 33 rows
Threshold Bit Score: 285.641
Created: 8-Dec-2005
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
  next features
Conserved site includes 15 residues -Click on image for an interactive view with Cn3D
Feature 1:GTP/Mg2+ binding site [chemical binding site]
Evidence:
  • Structure:1WDT: Thermus thermophilus FusA binds GTP and Mg2+, defined using 3.5 A contacts

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1              #######                                   ##                     #       
1WDT_A       11 TVALVGHAGSGKTTLTEALLYKTGAKERRgrveegttttdytpeaklhRTTVRTGVAPLLFRGHRVFLLDAPGYGDFVGE 90  Thermus thermoph...
YP_352303    10 CAALVGSYTCGKTTLFEDLLFAAGAIDRRgavkdgntvgdaapeararTMSTELSVANFDYLGEPWALIDCPGSVELTYE 89  Rhodobacter spha...
YP_172721    10 NIAIVGPYGSGKTSLLESLLAELGAINRPgrvdagnt----vgdsspeARSRQMTVEINVANTDSLTFLDCPGSVEFQQE 85  Synechococcus el...
BAC90753     11 SIAIVGPYQSGKSTLLESLLFVTGAISRKgtvedgnsvadgtaeararQMGVEVNAAFAEYQGVQLSFLDCPGSIEFAQE 90  Gloeobacter viol...
NP_442450    11 NVAIVGPYGSGKTTLLESVLWVSGSVSRKgnikdgntvsdsspeakarQMSVEVSVAGIDYENLRLNFLDCPGSIEFAQE 90  Synechocystis sp...
BAB76082     11 NVAIVGPYLSGKTTLLESLLFVTGAISRKgsvkdtntvgdsanesrdrHMSVEISTACAEYNDIRFTFIDCPGSVEFTQE 90  Nostoc sp. PCC 7120
BAC09911      6 NIALVGNYNSGKTTLAESILRLTHATKGKaiglldt-----speardrQMGVELNVVHTQYGELDLTLLDCPGSVELLQE 80  Thermosynechococ...
ZP_00054369  11 ACALVGPFASGKTSLLEAMLFACGAIGRQgrikdgttigdaspeararLMSVEPNMASADYLGEKWTFIDCPGSVEFQQD 90  Magnetospirillum...
NP_103868    14 CIAIVGPFASGKTTLLEAILARTGAIPRQnpvssgstvsdhspearahAMSVEATIATTEFMGEQITFVDCPGSIEFSFE 93  Mesorhizobium lo...
NP_762866     8 NIAFVGQSGSGKTTLIEKLLFACDATTHLgsiekgdtvtdfddqsiqyQHSIEATPVALSWQKHRLNIIDTPGLSELLGR 87  Vibrio vulnificu...
Feature 1                                                   # ##                                
1WDT_A       91 IRGALEAADAALVAVSAEAGVQvGTERAWTVAErlglPRMVVVTKLDKGGd--YYALLEDLRSTLg-pILPIDLPLYeg- 166 Thermus thermoph...
YP_352303    90 APCAMMVADLVVVVAEPLPERAvTLSPILRFLDdrniPHLIYVNKMDLPEa-tVRGTFEALQAISgrpLVLREIPIRdga 168 Rhodobacter spha...
YP_172721    86 TWNALIGVDGAIVVCEADPDRAlTLAPIFHFLDsweiPHCVFINKLERATearWQATLDSLRSCCsrpLVAQQYPLFqg- 164 Synechococcus el...
BAC90753     91 TWNALIGVDAALVVCEPEATRAlIVAPLLKFLDdwqiPHVLFINKMDRASt-pLKEVLAALQSISsrpLALRQFPIGqg- 168 Gloeobacter viol...
NP_442450    91 TYGALVGAGTAVIVCEADVSRVlTLAPLFKFLDdwaiPHLVFINKMDRAKq-pFGEVLQALKSVSsrpLIPQQYPIYkg- 168 Synechocystis sp...
BAB76082     91 TYNALMGVDAAIVVCEPIRERVlTLAPLFKFLDdweiPHLVFVNKMDRANi-hVLETLHALKAVSsrpLVAHQYPIMqre 169 Nostoc sp. PCC 7120
BAC09911     81 TLNALVGVDMAIVVCEPLSDRAfTLTPLFKFLDdwqiPHILFLNKMERAHd-pYREILAAYRQASsrpLVPHQYPIWqg- 158 Thermosynechococ...
ZP_00054369  91 SYNALMAVDVAVVVCEPDPARAvMVAPVLKFLDqhkiPHLLFVNKIDTAGt-rLKETLEALQAVSdrpLIMREIPIReg- 168 Magnetospirillum...
NP_103868    94 AEPVLAACDLAVVVAEADEKKIpALQLIMRKLDdlgvPRILFLNKVDKAIs-gVRDTLKMLQPASsvpLLLRQIPLRkd- 171 Mesorhizobium lo...
NP_762866    88 SLSVFPAVETSVLVLDPQMPLTqVTDKLFQFAQqqkkCQMIIINKLDNHGn-qLEKLLDEIQDHFghnCLPINLPSAd-- 164 Vibrio vulnificu...
Feature 1                                                                                       
1WDT_A      167 -------------gkWVGLIDVFhgkayryengee-reaevppeereRVQRFRQEVLEAIVETDEGLLEKYLEgee-vtg 231 Thermus thermoph...
YP_352303   169 -------------gkVTGMVDLVserawrwnphkpsdlvalpdtladASGEARTGMLEALADFDDALMAELLEdav-pst 234 Rhodobacter spha...
YP_172721   165 -------------drAVGFVDLIseqshsfge-------alnlplsmAESVARNTLLETLADYDDHLLEELLEeie-ppv 223 Synechococcus el...
BAC90753    169 -------------drLSGFIDLVseqawqyhpggppdpialpeiyrsDELAARAELLEVLAEFDDHLLEELVEeie-ppe 234 Gloeobacter viol...
NP_442450   169 -------------eeLQGYIDLIteqayqyhtgsaadpialpaelagAEHQARQEMLEALADFDDRLLEELLEeve-ppq 234 Synechocystis sp...
BAB76082    170 vgaaasadpnfggeqLTGFIDMVseqayqyhpgapadpipfpehlkqEEHTARAEMLEALANFDDHLLEELLEdie-ppa 248 Nostoc sp. PCC 7120
BAC09911    159 -------------ddLLGYIDLVteqayhyhagaaadlvpfpselqaVEQAARAELLEALANYDDHLLEELLEdia-ppe 224 Thermosynechococ...
ZP_00054369 169 -------------daVTGYIDLVseraykyrpgqtsavikipdalkgEESAARQEMLEHLADFDDHLMEELLEdiq-ppa 234 Magnetospirillum...
NP_103868   172 -------------gvVIGSIDLAlerayiyreyaesevaqipgddkaRELEARFSMLETLADHDDQLMEQLLEeie-ppk 237 Mesorhizobium lo...
NP_762866   165 ---------------GNEVVDCFfepqyq------------qatllsSVEATHETLIDQVVEVDEELMELYLEqgseltp 217 Vibrio vulnificu...
Feature 1                             # #                   
1WDT_A      232 EALEKAFHEAVRRGLLYPVALASGEreiGVLPLLELILEALPSP 275 Thermus thermophilus
YP_352303   235 DEIYANLTRDLQKDLIVPVFFGSAEnenGIRRLLKALRHEAPGA 278 Rhodobacter sphaeroides 2.4.1
YP_172721   224 EEILDDLRQDVSADLIVPVLTGSAQlywGISALLAALQQEMPTP 267 Synechococcus elongatus PCC 6301
BAC90753    235 AEIRTDLKRDLEDDLIVPVFCGVALrdfGVRPLLAALLSEVPEA 278 Gloeobacter violaceus PCC 7421
NP_442450   235 AEIEADFKQELGADLIVPVVLGAAEqdfGVRPLLDVLIKEAPDP 278 Synechocystis sp. PCC 6803
BAB76082    249 EEILKDLKMELGADLVVPVFFGVAEqdyGVRPLLEALLREAPEP 292 Nostoc sp. PCC 7120
BAC09911    225 SEIMADLRWELGADLIVPVFFGSAQtdyGVRPLLAALDREAPDA 268 Thermosynechococcus elongatus BP-1
ZP_00054369 235 DEIYDDLGKDLTGDLIVPVFFGSAEndgGIHRLLKALRHDAPGP 278 Magnetospirillum magnetotacticum MS-1
NP_103868   238 DAIFDDLAADLREGVVTPVLIGTAEkgnGVLRLLKAIRHDAPDI 281 Mesorhizobium loti MAFF303099
NP_762866   218 AQLHDPFEEALRTGHVVPICFASAQtgaGIELLLRTLAELMPMP 261 Vibrio vulnificus CMCP6

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