Conserved Protein Domain Family
Snu114p

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cd04167: Snu114p 
Snu114p, a spliceosome protein, is a GTPase
Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Statistics
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PSSM-Id: 206730
Aligned: 18 rows
Threshold Bit Score: 272.219
Created: 8-Dec-2005
Updated: 2-Oct-2020
Structure
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Aligned Rows:
  next features
Feature 1:GTP/Mg2+ binding site [chemical binding site]
Evidence:
  • Comment:Based on sequence similarity with EF-Tu.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                  ######                                                                 
NP_001026672  130 RNVTLCGHLHHGKTCFVDCLIEqthpeir--------------------------------------------------k 159  chicken
XP_451298     116 LNVGIFGALHCGKTSFTDMFALdthrnlpslt--------------------------------------------kkvk 151  Kluyveromyces...
XP_710595     150 RNVSIIGDFQSGKTSLIDQLIMyihp------------------------------------------------------ 175  Candida albic...
EAA17440      160 RNICIAGHFHHGKTTLVDRLIEytrektkgdyyfvnksgggnnnsgsssvsffklsdefdqvikknikknekkitpynsk 239  Plasmodium yo...
CAI76219      161 RNICIAGNFHDGKTTFIDRLIEftrqhththtfhtnshyntnnsnsp-------------nnstnshkstvkynkysnrn 227  Theileria ann...
EAN31518      140 RNICICGGFHDGKTTLIDRLIEfsryqstsl----------------------------------------------dtr 173  Theileria parva
XP_626934     176 RNICFIGEIHSGKTTFLDMLIKnthsykgd------------------------------------------------kk 207  Cryptosporidi...
NP_012748     134 INVGVIGPLHSGKTSLMDLLVIdshkripdms--------------------------------------------knve 169  baker's yeast
XP_449706     136 RTVCILGPLHSGKTSIADIFVLnnydrlncit--------------------------------------------knir 171  Candida glabr...
AAS52561      121 RAACVVGALHSGKTSLLDLLAVqaherlpyms--------------------------------------------kamr 156  Ashbya gossyp...
Feature 1                                                                                         
NP_001026672  160 rydqdLCYTDILFTEQERGVGIKSTPVTIVLpdt------------------kgkSFLFNIIDTPGHVNFSDEVTAGLRI 221  chicken
XP_451298     152 egwvpFRYLDQARIEKERGISLRLNGMSFAYess------------------rgrTYAVTMLDTPGHVNFWDDVGIALTA 213  Kluyveromyces...
XP_710595     176 -kiniKKYLDNHKLEIERELTIKSSPITLLLsds------------------ksrSQILNLIDTPGHVNFEDETLAALNI 236  Candida albic...
EAA17440      240 rmdclTSYTDTRLDEQARGLSIKSIPISLIFqnkvyenipnnilldkksqnlkykSYLFNIIDTPGHVNFFDEFLCSLNV 319  Plasmodium yo...
CAI76219      228 gdmeyNRYMDNRMDEQLRELSIKSTPISIILenrlyekin------eesnypkykSYLFNIFDTPGHVNFMDEFVYSLAI 301  Theileria ann...
EAN31518      174 knpefTRYTDSRLDEQARELSIKSTPISLIFqntlyenin------dvsefpkskSYLFNIFDTPGHVNFMDEFVHALAI 247  Theileria parva
XP_626934     208 niplpERYCDSRKDEQDRGISIKASPISLVLpns------------------mdkSFLFNILDTPGHVNFVDEACISVRI 269  Cryptosporidi...
NP_012748     170 lgwkpLRYLDNLKQEIDRGLSIKLNGSTLLCtdl------------------eskSRMINFLDAPGHVNFMDETAVALAA 231  baker's yeast
XP_449706     172 lgwkqLRYMDNTRQEIERGMTLKLNGMTFLAtdm------------------qdkSHVINLLDTPGHVDFIDEVAVAMSV 233  Candida glabr...
AAS52561      157 qgwkpLKYTDSLKIEIERGVSMKLNGFTFLGadg------------------rgqSHVLTLIDTPGHVNFMDETAVAMRA 218  Ashbya gossyp...
Feature 1                                             ## #                                        
NP_001026672  222 SDGVVLFIDAAEGvmlNTERLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLIsmystden---- 297  chicken
XP_451298     214 CQYGVIIVDVIEGitsVVSKLIRELISNGIPFIIVLNKIDRLILDLRLPPTDAYSKLQYIVNEINTYTkerf-------- 285  Kluyveromyces...
XP_710595     237 TDGVVLIIDAVLGmtiQDQYLIDEVIKQRLSMIIIINKFDKLILELKLPIKDCYYKLVGIIDDINDYIksittttttttt 316  Candida albic...
EAA17440      320 CECCCLVVDVVDGcmyVTENVIKACIYENVKIILVINCIDKLIMDLRLPPNDAYHKINYTIEEINMKIeticnllnktee 399  Plasmodium yo...
CAI76219      302 CDGCVLIVDVLIGltkVTEQIIIQCLQTGVHMCLILNCIDRLILELKLPPADAYLKIQHTIIEINQFIyssstv------ 375  Theileria ann...
EAN31518      248 CDGCVLVIDVLMGltsVTEQIIRQCVHDQVHMCLVLNCIDRLILELKLPPNDAYLKIQHTLTEVNRYVtslckllns--- 324  Theileria parva
XP_626934     270 SEGVILFLDCVIGltkQLERLLHYCLSEGKKVVLVINQIDRLVLECRLPPYDAYFKLKHLISAVNNSIlefasihgfntd 349  Cryptosporidi...
NP_012748     232 SDLVLIVIDVVEGvtfVVEQLIKQSIKNNVAMCFVINKLDRLILDLKLPPMDAYLKLNHIIANINSFTkgnvf------- 304  baker's yeast
XP_449706     234 SDTALVCIDIIEGissTTRYIIKECQKRGLSMVFLINKIDRLVLELMLPPTEAYMKLQELVLNIQGATkdsmf------- 306  Candida glabr...
AAS52561      219 CDVCIVVVDVVEGlssVVESLIKRAERLGLPLIFVLNKIDRLLLELKLPVKDCSLKLHALVDKINAYTqgry-------- 290  Ashbya gossyp...
Feature 1                               ###                                                       
NP_001026672  298 ---------lvlspllGNVCFSSSQYSICFTlgSFAKIYadtygdinyqefakrlwgdiyfnpktrkftkkaptsssqrs 368  chicken
XP_451298     286 ------------spelGNVLFASTKFGFLFSveSFVNSFyakslkdkteqfaaqlwgqinyregafyqtefitdn----- 348  Kluyveromyces...
XP_710595     317 ekkkeykykykfspdlNNVLFASSKFGIIFSlkSFAKLYitkqnslmnidqfskklwgeiyydpq--------------- 381  Candida albic...
EAA17440      400 -----eknswllsplkNNVLFSSSLYGIFFSlkSFSKIYcdlhnsyninidefskylwgdiyydeekfkfvpspvysnqk 474  Plasmodium yo...
CAI76219      376 ----------lghtgtTSTKVSSSNTNTKET--HFGDKEtpf-------------------------------------- 405  Theileria ann...
EAN31518      325 -------evsefnpvnNNVAFASAKFGIFFTlkSFATFYtndnvtefskllygnyyynpiknsittsntaspmvngs--- 394  Theileria parva
XP_626934     350 -----etrnllfgperGNVGFASGRYNFFFTlnSFARKYlkhngitnncilieksqqlsfrlwgdyyfnkennsfetdsn 424  Cryptosporidi...
NP_012748     305 ------------spidNNIIFASTKLGFTFTikEFVSYYyahsipsskiddfttrlwgsvyyhkgnfrtkpfenvek--- 369  baker's yeast
XP_449706     307 ------------tpenNNILFASAKFGIIFSieQFVSKCygkvlagpklnefvkrvwrnnyydrgvfhprtlndknheat 374  Candida glabr...
AAS52561      291 ------------sperGNVLFASSKLGFTFTleEFVKYYyapklqagsselverlwgrvyfhkgqfslhpnpenevtfvq 358  Ashbya gossyp...
Feature 1                                                                                        
NP_001026672  369 fvefileply------kilaqvvgdvdttlprtldelgihltkeelklnirpllrlvckkffgeftGFVDMCVQHIPSP 441  chicken
XP_451298     349 ------------------------------iafiqfilqplykvfthtlsaseeelrtvietnfqiRLSDEILSKDPQP 397  Kluyveromyces ...
XP_710595     382 -----------------------------------------nhkfttttttttstttttinnnnnnSLKHSFISFILEP 419  Candida albica...
EAA17440      475 rsfvefilfpi----ykifgyvtseekdflipflkklnvtlkktdylfnnkyllkkictmifedttAFVDVVIDNCPSP 549  Plasmodium yoe...
CAI76219      406 ----------------------------------------------------------------ggTLGPSTVTELFDP 420  Theileria annu...
EAN31518      395 ----------------------------ehlngvngvvngvngangvddhntgevdlertfvvfilEPLYKLISHIASD 445  Theileria parva
XP_626934     425 vsqdrsfvefilnpiykllgytvseeddklssflktvgiyltkkelklnvkerleivckrffgnsaSFTDFITKNIPNP 503  Cryptosporidiu...
NP_012748     370 -----------------------------yptfvefiliplykifsyalsmekdklknllrsnfrvNLSQEALQYDPQP 419  baker's yeast
XP_449706     375 fvtfilnpiy-----kifthtlsrevdvvsktlkknfgvsltedemandpqpllkvvftkifpdqkALISSLTSCSGSG 448  Candida glabra...
AAS52561      359 fvlkplyki--------ithtlskdpsdierllhqelgislgdippdvdqvpllkmvmgrvfgdetGLIDAIVKHGQPS 429  Ashbya gossypi...

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