1X18,1EGA,1WF3,3IEV


Conserved Protein Domain Family
Era

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cd04163: Era 
Click on image for an interactive view with Cn3D
E. coli Ras-like protein (Era) is a multifunctional GTPase
Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Statistics
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PSSM-Id: 206726
Aligned: 135 rows
Threshold Bit Score: 129.889
Created: 1-Jul-2005
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
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Conserved site includes 17 residues -Click on image for an interactive view with Cn3D
Feature 1:GTP/Mg2+ binding site [chemical binding site]
Evidence:
  • Structure:1WF3: Thermus thermophilus Obg binds GppNHp, a GTP analog and Mg2+, defined using 3.5 A contacts

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                #######             #   ###                     #                    
1X18_X      3 SYCGFIAIVGRPNVGKSTLLNKLLGqKISITSRKAQTTRHRIVGIHTEgaYQAIYVDTPGLhmeekrainrlmnkaasss 82  Escherichia coli
1WF3_A      5 TYSGFVAIVGKPNVGKSTLLNNLLGvKVAPISPRPQTTRKRLRGILTEgrRQIVFVDTPGLhkpmdalgef-mdqevyea 83  Thermus thermophilus
NP_948040  13 TRCGFVALIGAPNVGKSTLVNALVGsKVTIVSRKVQTTRALIRGIVIEsgSQIILVDTPGIfapkrrldra-mvktawsg 91  Rhodopseudomonas p...
NP_966500   4 QKCLFVTIAGLPNAGKSTLINSIIGkKIAIVTPKVQTTRTQIRGVATCnnTQIVFTDSPGIfsaetkleka-lvksawsa 82  Wolbachia endosymb...
YP_033346   7 TRSGFVVLIGMPNAGKSTLVNQLVGtKVSIVTHKVQTTRTLIRGIVIHdnAQIVLIDTPGVfsphkrlera-mvsaawgg 85  Bartonella hensela...
YP_154013   7 EKCSLVAVVGATNAGKSTLINELVGfKASIVTPKVHTTRVRMNAVRNDgnVQLVFTDTPGVfapktvlekf-lvknawms 85  Anaplasma marginal...
AAV90008   12 QHCGLVAIVGAPNAGKSTLVNALVGqKIAIISPKAQTTRARLMGIALQdqTQILLVDTPGIftpkkrfdra-mvaaawgs 90  Zymomonas mobilis ...
YP_180405   6 RKCSMSAIVGATNAGKSTLVNVLVGqKVAAVTPKVQTTRVRMHAVSNHenVQLIFIDTPGIfspktklekf-lvkhawms 84  Ehrlichia ruminant...
YP_192206   3 TRCGFVALVGAPNAGKSTLLNRIAGaKLSIVSPKAQTTRFRTLGIVMQdnAQIILVDLPGIfkprrrldra-mvnaawsg 81  Gluconobacter oxyd...
YP_197841   4 QKCLFVTIAGLPNAGKSTLINSITGkKIAIVTPKVQTTRTQIRGIAIYneTQIIFTDSPGIfsaetkleka-lvksawsa 82  Wolbachia endosymb...
Feature 1                                                ## #                           ##    
1X18_X     83 iGDVELVIFVVEGtrw---tpDDEMVLNKLReg--kaPVILAVNKVDnvqekADLLPHLQFLASqmnflDIVPISAEtGL 157 Escherichia coli
1WF3_A     84 lADVNAVVWVVDLrhp--ptpEDELVARALKplvgkvPILLVGNKLDaakypEEAMKAYHELLPe---aEPRMLSALdER 158 Thermus thermophilus
NP_948040  92 aHDADIVCVLLDArag--ineQAEDILANLAnv--drPKLLVLNKIDli-arEKLLALAQAANQrlafdQTFMVSALtGD 166 Rhodopseudomonas p...
NP_966500  83 vKDSDITLSLVDVsnylknieRIKTIFMRLQrt--kgRCILVINKTDlv-krPELKMAHEHLNLlykfeKVFMISALkND 159 Wolbachia endosymb...
YP_033346  86 aKNADVLLVLIDAqng--lsdEVCKMLDIVAni--kqDKILVLNKIDtv-akSSLLALTAGINEhvkflQTFMISALkGS 160 Bartonella hensela...
YP_154013  86 iRGADVVVLVLEArny--lcsQVARVVATVKhs--hiPAVAVLNKTDll-qeCRIRGILAHVQSmheftGVFAISALhGL 160 Anaplasma marginal...
AAV90008   91 aEGANLVALVVDAssg--ltrRIEPLVEAVAar--kePKVIILNKVDit-pkAELLALAQKLYEaikpeALFMVSATtGD 165 Zymomonas mobilis ...
YP_180405  85 lKGIENVIVLVDVkny--lnqHLKKIIDRIKhs--nlNAILVLNKIDiv-hqSIVSEVIEYMYSlykfsKAFTISALyGI 159 Ehrlichia ruminant...
YP_192206  82 sQDADLTLLLVDAksg--lreDVREIIAKLAes--knRIWLVLNKTDlv-erGELLPLTQEISGlinveHVFMLSARsGE 156 Gluconobacter oxyd...
YP_197841  83 iKGDDVILLLIDAssylknieRIKTIFTRLRht--ktKCIFVINKIDlv-kkPELKMTYKHLDLlyklkKIFTISALkSD 159 Wolbachia endosymb...
Feature 1                  
1X18_X    158 NVDTIAAIVRKHL 170 Escherichia coli
1WF3_A    159 QVAELKADLLALM 171 Thermus thermophilus
NP_948040 167 GVDDLRKALAAQV 179 Rhodopseudomonas palustris CGA009
NP_966500 160 GLSDLMNYLSEVA 172 Wolbachia endosymbiont of Drosophila melanogaster
YP_033346 161 GCKDLLHALSTMM 173 Bartonella henselae str. Houston-1
YP_154013 161 GTEALLTHLRESA 173 Anaplasma marginale str. St. Maries
AAV90008  166 GVADLKHSLADMM 178 Zymomonas mobilis subsp. mobilis ZM4
YP_180405 160 GIDKLVDYLCETS 172 Ehrlichia ruminantium str. Welgevonden
YP_192206 157 GVSDLMARLAAEL 169 Gluconobacter oxydans 621H
YP_197841 160 GLSDLMDYLSEVA 172 Wolbachia endosymbiont strain TRS of Brugia malayi

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