Conserved Protein Domain Family
eEF2_C_snRNP

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cd04098: eEF2_C_snRNP 
eEF2_C_snRNP: This family includes a C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. This domain is homologous to the C-terminal domain of the eukaryotic translational elongation factor EF-2. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Statistics
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PSSM-Id: 239765
Aligned: 28 rows
Threshold Bit Score: 124.666
Created: 12-Jun-2006
Updated: 2-Oct-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q15029     829 EPYYFVEVQAPADCVSAVYTVLARRRGHVTQDAPi-pGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSVFHH--WQ 905  human
CAE76428   844 EPMYSVSMTGPQDAVSTVYNILARRRGHVLSDGPi-aGTPLYRVNGLLPVIDSFGFETDLRINTPGQAMVSLVFDR--WN 920  Neurospora crassa
CAG84240   811 EPIYSVHVTCPHAAVKVVLEVLEKRRGHLTSDTPi-gGTTLYEVMGYVPVMDSFGLETDIRVATQGQALVSLIFND--WQ 887  Yarrowia lipolyt...
XP_460715  846 EPIYTVYVTCSYQAIVAVKKLLDRRRGMVTTENPv-pGTQLFHIEGQVPVIESIGLESDLRLQTQGQAMCFLVFER--WD 922  Debaryomyces han...
ABA27171   771 EPYSEIEVVTPFESSKMIFNILLNRRAIILNDMPi-qGTLHYRILFLIPTINTIGLETDIRYHTQGQSLIIGFFKG--WY 847  Bigelowiella natans
P36048     859 EPIYEVDITVHAPLLPIVEELMKKRRGSRIYKTIkvaGTPLLEVRGQVPVIESAGFETDLRLSTNGLGMCQLYFWHkiWR 938  baker's yeast
CAA82015   859 EPIYEVDITVHAPLLPIVEELMKKRRGSRIYKTIkvaGTPLLEVRGQVPVIESAGFETDLRLSTNGLGMCQLYFWHkiWR 938  baker's yeast
EAL51352   802 EPIYVVEIITPENAIKGITKSISDRRGFIIQQQPl-eGTPFQQIHGNIPLIEIFGFETDIRTFSRGQAFVQSWFSH--WG 878  Entamoeba histol...
NP_984737  792 EPIYEVDIVVHEVLASIVKNLFAKRRSARIYKIEaivGTPLIEVKGQMPVIESVGFETDLRLATSGGAMCQMHFWNkiWH 871  Eremothecium gos...
XP_451298  785 EPIYEVDIIVSGVLESVIQNLLKRRRGGRIYKTEkivASPFIEIKAQLPVIESIGFETDLRVATAGSGMCQMHFWNkiWR 864  Kluyveromyces la...
Q15029     906 IVP 908  human
CAE76428   921 IVP 923  Neurospora crassa
CAG84240   888 VVP 890  Yarrowia lipolytica CLIB99
XP_460715  923 VVP 925  Debaryomyces hansenii CBS767
ABA27171   848 IVP 850  Bigelowiella natans
P36048     939 KVP 941  baker's yeast
CAA82015   939 KVP 941  baker's yeast
EAL51352   879 NVP 881  Entamoeba histolytica HM-1:IMSS
NP_984737  872 KVP 874  Eremothecium gossypii
XP_451298  865 KVP 867  Kluyveromyces lactis NRRL Y-1140
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