3ZM8


Conserved Protein Domain Family
CBM35_mannanase-like

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cd04086: CBM35_mannanase-like 
Click on image for an interactive view with Cn3D
Carbohydrate Binding Module 35 (CBM35); appended to several carbohydrate binding enzymes, including several glycoside hydrolase (GH) family 26 mannanase domains.
This family includes carbohydrate binding module 35 (CBM35) domains that are appended to several carbohydrate binding enzymes, including periplasmic component of ABC-type sugar transport system involved in carbohydrate transport and metabolism, and several glycoside hydrolase (GH) domains, including GH26. These CBM6s are non-catalytic carbohydrate binding domains that facilitate the strong binding of the GH catalytic modules with their dedicated, insoluble substrates. Examples of proteins having CMB35s belonging to this family are mannanase A from Clostridium thermocellum (GH26), Man26B from Paenibacillus sp. BME-14 (GH26), and the multifunctional Cel44C-Man26A from Paenibacillus polymyxa GS01 (which has two GH domains, GH44 and GH26). GH26 mainly includes mannan endo-1,4-beta-mannosidase which hydrolyzes 1,4-beta-D-linkages in mannans, galacto-mannans, glucomannans, and galactoglucomannans, but displays little activity towards other plant cell wall polysaccharides. A few proteins belonging to this family have additional CBM3 domains; these CBM3s are not found in the CBM6-CBM35-CBM36_like superfamily.
Statistics
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PSSM-Id: 271152
Aligned: 42 rows
Threshold Bit Score: 114.237
Created: 11-Aug-2005
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
metal binding
Conserved site includes 3 residues -Click on image for an interactive view with Cn3D
Feature 1: metal binding site [ion binding site], 3 residue positions
Conserved feature residue pattern:[EQN] E [DN]Click to see conserved feature residue pattern help
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1           # #                                                                          
3ZM8_A        13 VTYEAEDAILTg-TTVDTaqv----------------gyTGRGYVTGFDegsDKITFQISSatTKLYDLSIRYAAIy--- 72   Podospora anse...
YP_003845544  39 VRYEAEKATLTg-TEVKTgt-----------------ifSNGAGVDGFDtagDAVTFNVNVeqAGRYNITIGYATPy--- 97   Clostridium ce...
YP_004308554  30 IKYEAEEATLHn-VGLGDnsy---------------kgySGDGYVAGMDtsdAYIEFTVTVpkSGRYNLYVNYCAPy--- 90   Clostridium le...
WP_002851520  37 QVYEFENGSTSg-GKIFSngtdglkrggdwsdatdlsnfSGKGFSYLDQk-gTTVSIEVEVpaDGLYELTFCYCQPsd-- 112  Ruminococcus a...
CBL17621     529 GAYECEDGNIQtnKGTTTvay---------------dycSGGKYVYLQGe-gDYIEQTVTVekAGKYAIRYGYQQNfe-- 590  Ruminococcus s...
CBL17621      40 FTAEAEDCTLLtgASVTTnvygt-----------eypgySGDGFVWAGNa--GGMTFEVDVpeNAMYELTTRCWMYlgdp 106  Ruminococcus s...
YP_003248821  30 IRLEAEDAVLAddHKVVVted---------------akaSGGKYVQMKE---GNLEFKVTVpaTGYYTLWATYQLPta-- 89   Fibrobacter su...
YP_003248819  21 APYEAEDATITkdAAVASst-----------------eaSGGKYVKMNGg--DITFSKVTVekAGKYTIVLHYMNNy--- 78   Fibrobacter su...
WP_019910313  34 FTIESENAQLTsdLQVVTqiygq-----------pkpgySGSGFVWMQNs--GTITFKVTVpeTGMYTISTRYMQEls-- 98   Paenibacillus ...
CAB52403      36 DKYEFEDGIHKg-AQIYTdyvgqne-------ygevfdlTGSTCSFIAQk-gTSTSVNVEVdkEGLYEIFICYVQPyd-- 104  Clostridium th...
Feature 1                                                                  #     
3ZM8_A        73 -GDKRTNVVLNNGavSEVFFPAGDs-FTSVAAGqVLL-NAGQNTIDIVN--NWGWYLIDSITLT 131  Podospora anserina DSM 980
YP_003845544  98 -GQKNNTLVVNGSviSDCVFPASDt-VKQLTVNnISL-KAGANTIAIVN--SWGWMQVDYIDVQ 156  Clostridium cellulovorans 743B
YP_004308554  91 -GEKQETITVNGGqsFSGLFTSNNa-FELMNVGaIKL-NAGENKIRISR--FWGWTLFDYIELE 149  Clostridium lentocellum DSM 5427
WP_002851520 113 rNKKVQYLNVNGAnqGEVSFPYNEk-FAETSGGiVLL-KNGRNTIELEG--YWGYTYFDYLKLA 172  Ruminococcus albus
CBL17621     591 kNGKTQNLYVNGTavGEAFFPYSIl-FGESDAIvVEL-KAGKNTIKVES--GEGWTYFDYLTVS 650  Ruminococcus sp. 18P13
CBL17621     107 gTTRMQTLAIDGDvkSSIYIANNEk-WEDSSFGfFYL-EKGKHTIEVGAtgSWGFILYDTVTFD 168  Ruminococcus sp. 18P13
YP_003248821  90 sGNKIQNLTVNDVsaGQISFGTSDdfKTIKGAGkIKL-TTGENKIGIVH--SWGWVNIDYIELT 150  Fibrobacter succinogenes subsp...
YP_003248819  79 gGSKINNVEVGGAs-SAVTFDVTDk-GKFADVEtVMNlAAGENTIAITN--SWGWIDLDYIEVK 138  Fibrobacter succinogenes subsp...
WP_019910313  99 aDGRLQYLSVNGTnrGSYMLPYTTk-WSNFDFGyQKL-NQGSNTIELKA--GWGFAYFDSFTVD 158  Paenibacillus sp. HW567
CAB52403     105 kNKKVQYLNVNGVnqGEISFPFTLk-WREISAGiVKL-NAGINNIELES--YWGYTYFDYLIVK 164  Clostridium thermocellum YS

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