4KMQ,4KWU


Conserved Protein Domain Family
CBM35_Lmo2446-like

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cd04083: CBM35_Lmo2446-like 
Click on image for an interactive view with Cn3D
Carbohydrate Binding Module 35 (CBM35) domains similar to Lmo2446
This family includes carbohydrate binding module 35 (CBM35) domains that are appended to several carbohydrate binding enzymes. Some CBM35 domains belonging to this family are appended to glycoside hydrolase (GH) family domains, including glycoside hydrolase family 31 (GH31), for example the CBM35 domain of Lmo2446, an uncharacterized protein from Listeria monocytogenes EGD-e. These CBM35s are non-catalytic carbohydrate binding domains that facilitate the strong binding of the GH catalytic modules with their dedicated, insoluble substrates. GH31 has a wide range of hydrolytic activities such as alpha-glucosidase, alpha-xylosidase, 6-alpha-glucosyltransferase, or alpha-1,4-glucan lyase, cleaving a terminal carbohydrate moiety from a substrate that may be a starch or a glycoprotein. Most characterized GH31 enzymes are alpha-glucosidases.
Statistics
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PSSM-Id: 271149
Aligned: 39 rows
Threshold Bit Score: 111.578
Created: 11-Aug-2005
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
metal bindingligand binding
Conserved site includes 3 residues -Click on image for an interactive view with Cn3D
Feature 1: metal binding site [ion binding site], 3 residue positions
Conserved feature residue pattern:[EQ] [EQ] [DN]Click to see conserved feature residue pattern help
Evidence:
  • Structure:4KMQ: Listeria monocytogenes Lmo2446 with bound calcium

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1            # #                                                                          
4KMQ_A        960 APYEAEFGHLt-------NVTTASDHa--GYTGTGFVAGFDAe----KEAVEFDIDavd-gaSDYTXEVRYSAGVEd--- 1022 Listeria mono...
Q44052        500 TRYPAAFAAWg------gGAGFNNNHp--GYDGNGFVDGLQAgsgsaDPLVTFAVQvp--hrAATPSGYRYANATDdnt- 568  Arthrobacter ...
YP_001038534  426 NRYEAEYARIlg-----tATVSHGGHs--GYSGTGFVEGYAGs---nNASTNFVVTae--tdGYYNVTLRYSAGPYpga- 492  Clostridium t...
YP_003117584  325 VTYQAESQALs------gGAGVNTNHt--GYTGTGFVDGFAAs---vGATLTTTVNts--atATKTLTIRYSAGPIsga- 390  Catenulispora...
YP_003117645  502 PVYQSQVAAW--------GGGAMFDNaasGFSGNGYVDGLGSv----GARVVFGVTga---gGTTPVTIRYANSGSaasl 566  Catenulispora...
ADJ45902      548 AHLEAEDARNt------gGVKTNVNHt--GYSGRAFLDGLWAq----GASSSFTVHrattaaERAAITVRYANANNd--- 612  Amycolatopsis...
ADJ46322      141 ARCEAEDLTTd-------GLGIATDHs--GYTGEGFLAGFESt----GNSVTADVLap--taGTYSVTARYANGQGgdgq 205  Amycolatopsis...
NP_641169     650 RQYEAENFDFqrigslvaNGVSGAVH---NYQGLGYVDFGGNp----GARLRTTINvp--qaGTYTLATRYSAPGAs--- 717  Xanthomonas a...
YP_972610     636 HQYEAEHFDFrniarmvaNGVNEAVR---NYQGLGYVNFGTSs----AASVRGRVQvp--aaGRYQLLTRYAVAGAd--- 703  Acidovorax av...
YP_001983740  885 RQYEAEHFDFrsiggqvtNGINGAIR---NYQGLGYLNFGTSa----SASVRDHVSvs--saGTYQLRTRYSLTGAn--- 952  Cellvibrio ja...
Feature 1                                                                                  #    
4KMQ_A       1023 ----ATRTVYINGk---------kQQITLPKta---nWDTWNTVEVPVTLQA-GNNQVVFDFea-dDTAGINFDHVVI 1082 Listeria monocy...
Q44052        569 --tsKTTTKKANPekadrstvdgpVHVSFPGla---tWDTWGVAAGTITLDA-GLNLVTIGRga-tDKGAINLNWIEL 639  Arthrobacter gl...
YP_001038534  493 -pktRYLRMVVNGgl--------hKDVACIQta---nWDTWESTTVKVFLQA-GINRLDFKAfasdESDCVNIDYIDV 557  Clostridium the...
YP_003117584  391 -ptnRVLGLYVNGtk--------vRDVTFTGta---dWNTWANNTQSITLPGgAGNTIAIISeqtgNASGVNIDYIAL 456  Catenulispora a...
YP_003117645  567 tisaKNVAGTVSGs----------TSVSLPGtg---gAGTWSTVTVNLALAA-GTNLITLERts-tDSGSVNLDSIQV 629  Catenulispora a...
ADJ45902      613 ---tRTMTLSVDGqp--------vRQVGFPKvs--dsWDAWGTTTFADVPLT-GRDPVVTLSeapgDTGAINLDWLEY 676  Amycolatopsis m...
ADJ46322      206 -yvtRTLSVSVDGga--------aQKLTLPVta---dWNAWALASVPVTLAA-GHHSVRLERta-aDSGDVNLDGLAV 269  Amycolatopsis m...
NP_641169     718 ---vGTVDLYVNG-----------VRAGTPAfaqtssASDWASSLLTATLSA-GDNVVEYRAsa-gTQAKLYLDNLAV 779  Xanthomonas axo...
YP_972610     704 ---vGTIDMYVNG-----------ARVASPVfaqtpsVSDWAVQALPVDLQA-GVNTVEFRAra-aAPASVYFDNVVL 765  Acidovorax aven...
YP_001983740  953 ---iSSIDVYVNG-----------ARVATPVftqtssTSNWAINQQTINLNA-GSNTIEFRAta-aRSSIIYFDNIVI 1014 Cellvibrio japo...

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