Conserved Protein Domain Family
MATH_TRAF4

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cd03781: MATH_TRAF4 
Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF4 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF4, including the Drosophila protein DTRAF1. TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF4 is highly expressed during embryogenesis, especially in the central and peripheral nervous system. Studies using TRAF4-deficient mice show that TRAF4 is required for neurogenesis, as well as the development of the trachea and the axial skeleton. In addition, TRAF4 augments nuclear factor-kappaB activation triggered by GITR (glucocorticoid-induced TNFR), a receptor expressed in T-cells, B-cells and macrophages. It also participates in counteracting the signaling mediated by Toll-like receptors through its association with TRAF6 and TRIF. DTRAF1 plays a pivotal role in the development of eye imaginal discs and photosensory neuron arrays in Drosophila. TRAF4 contains a RING finger domain, seven zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more divergent N-terminal alpha helical region (TRAF-N), and a highly conserved C-terminal MATH subdomain (TRAF-C) with an eight-stranded beta-sandwich structure. TRAF-N mediates trimerization while TRAF-C interacts with receptors.
Statistics
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PSSM-Id: 239750
Aligned: 7 rows
Threshold Bit Score: 291.712
Created: 18-May-2006
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
TNFR bindingtrimer
Feature 1:TNFR binding site
Evidence:
  • Comment:TNFR = Tumor Necrosis Factor Receptor
  • Comment:Based on the binding of TRAF2, TRAF3 and TRAF6 to peptides of TNFR-2 and CD40, members of the TNFR superfamily.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                              # #              #                     
NP_004286 308 GVLIWKIGSYGRRLQEAKAKPNLECFSPAFYTHKYGYKLQVSAFLNGNGSGEGTHLSLYIRVLPGAFDNLLEWPFARRVT 387 human
NP_477416 331 GTLLWKITDWSAKMAEARGKDGLELVSPPFYTSQYGYKLQASMFLNGNGPGENTHVSVYIKVLPGEYDALLKWPFSHSIT 410 fruit fly
XP_415823  62 GTLIWKISDYARKLQEAKTRSNYEFFSPPFYTHKYGYRLQVSAFLNGNGSGENSHLSVYIRVLPGEYDNLLEWPFSYRVT 141 chicken
AAH65969  308 GVLIWKLTDYSRKLQEAKLRNNHEFFSPPFYTHRYGYKLQVSAFLNGNGSGEGSHLSIYIRVLPGEYDNLLEWPFSYKVT 387 zebrafish
AAH80018  308 GVLIWKISDYSRKVQEAKVRGNYESFSPPFYTHKYGYKLQVSAFLNGNGSGEGSYLSVYIRVLPGEYDNLLEWPFSYRVT 387 African clawed frog
XP_780517 100 GQLLWRITDYAEKFSKAKNEEEVELVSPPFFTGRYGYKLQVSIFPSGNGSGEGEHVSVYIRVTNGDFDSLLRWPFTFPIS 179 purple urchin
FAA00115  308 GTLLWKIPGYSQKLQAAQKDQAIEMRSPPFYTHRYGYKLQLSAFLNGNGSGLNSHMSLYIRVLPGDYDSLLEWPFSHDIT 387 Ciona intestinalis
Feature 1                          #                      ####                            
NP_004286 388 FSLLDQSdpglakPQHVTETFHPDPNWKNFQKPgtwrgsldeSSLGFGYPKFISHQDIRKRNYVRDDAVFIRAAVE 463 human
NP_477416 411 FTLFEQGaq--sgQGGVAESFVPDPTWENFQRPsn-----epDQLGFGFPRFISHELLHSRPFIKGDTVFLRVKVD 479 fruit fly
XP_415823 142 FSLLDQSdpslskPQHITETFHPDPNWKNFQKPgasrgsldeSTLGFGYPKFISHEDIKKRNYVRDNAIFIKASVE 217 chicken
AAH65969  388 FSILDQSdpslskPQHITETFNPDPNWKNFQKPcssrnsldeSTLGFGYPKFISHEEIKKRNYIRDNSIFLKASIE 463 zebrafish
AAH80018  388 FSLLDQSdpslskPQNITETFNPDPNWKNFQKPggsrnsldeSTLGFGYPKFISNEDIRKRNYVRDNAIFLRASVE 463 African clawed frog
XP_780517 180 FTLLDQNedp-nkRMHIKESFTPDPTWKNFQRPsk-----dvHVLGYGYPTFVSHNFLKTRDYIKDDVMFLRASIE 249 purple urchin
FAA00115  388 FTILDQGdplsskRSHISVRFTPDPTWKNFQQPtadg--dddSTLGFGYPKFVSHKELKDNCYLKGNSLFIKAVVD 461 Ciona intestinalis

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