Conserved Protein Domain Family
MATH_TRAF5

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cd03780: MATH_TRAF5 
Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF5 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF5 was identified as an activator of nuclear factor-kappaB and a regulator of lymphotoxin-beta receptor and CD40 signaling. Its interaction with CD40 is indirect, involving hetero-oligomerization with TRAF3. In addition, TRAF5 has been shown to associate with other TNFRs including CD27, CD30, OX40 and GITR (glucocorticoid-induced TNFR). It plays a role in modulating Th2 immune responses (driven by OX40 costimulation) and T-cell activation (triggered by GITR). It is also involved in osteoclastogenesis. TRAF5 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more divergent N-terminal alpha helical region (TRAF-N), and a highly conserved C-terminal MATH subdomain (TRAF-C) with an eight-stranded beta-sandwich structure. TRAF-N mediates trimerization while TRAF-C interacts with receptors.
Statistics
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PSSM-Id: 239749
Aligned: 3 rows
Threshold Bit Score: 330.445
Created: 18-May-2006
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
TNFR bindingtrimer
Feature 1:TNFR binding site
Evidence:
  • Comment:TNFR = Tumor Necrosis Factor Receptor
  • Comment:Based on the binding of TRAF2, TRAF3 and TRAF6 to peptides of TNFR-2 and CD40, members of the TNFR superfamily.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                              # #              #                     
AAC51329  385 GKLIWKVTDYKMKKREAVDGHTVSIFSQSFYTSRCGYRLCARAYLNGDGSGRGSHLSLYFVVMRGEFDSLLQWPFRQRVT 464 human
CAG32031  403 GKLIWKITDYKMKKKEAVEGRVLSIFSQPFYTSRCGYRLCARAYLNGDGSGKGTHVSLYFVVMRGEFDSLLPWPFKQKVT 482 chicken
XP_583804 404 GKLIWKVTDYKLKKKEALDGHTVSIFSQPFYTSRCGYRLCARAYLNGDGSGKGTHLSLYFVVMRGEFDSLLQWPFRQRVT 483 cattle
Feature 1                      #                ####                              
AAC51329  465 LMLLDQs-gKKNIMETFKPDPNSSSFKRPDGEMNIASGCPRFVAHSVLENAKNAYIKDDTLFLKVAVD 531 human
CAG32031  483 LMLLDQtgkKNHIVEVFRADPNSSSFKRPDGEMNIASGCPRFVPHTVLENTKNTYVRDDTLFLKVVVD 550 chicken
XP_583804 484 LMLLDQsgkKNHIMETFKADPNSSSFKRPDGEMNIASGCPRFVAHSTLENAKNTYIKDDTLFLKVAVD 551 cattle

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