1FLL,1RF3,1ZMS,2GKW


Conserved Protein Domain Family
MATH_TRAF3

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cd03777: MATH_TRAF3 
Click on image for an interactive view with Cn3D
Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF3 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF3 was first described as a molecule that binds the cytoplasmic tail of CD40. However, it is not required for CD40 signaling. More recently, TRAF3 has been identified as a key regulator of type I interferon (IFN) production and the mammalian innate antiviral immunity. It mediates IFN responses in Toll-like receptor (TLR)-dependent as well as TLR-independent viral recognition pathways. It is also a key element in immunological homeostasis through its regulation of the anti-inflammatory cytokine interleukin-10. TRAF3 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more divergent N-terminal alpha helical region (TRAF-N), and a highly conserved C-terminal MATH subdomain (TRAF-C) with an eight-stranded beta-sandwich structure. TRAF-N mediates trimerization while TRAF-C interacts with receptors.
Statistics
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PSSM-Id: 239746
Aligned: 7 rows
Threshold Bit Score: 391.618
Created: 18-May-2006
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
TNFR bindingtrimer
Conserved site includes 12 residues -Click on image for an interactive view with Cn3D
Feature 1:TNFR binding site
Evidence:
  • Comment:TNFR = Tumor Necrosis Factor Receptor
  • Comment:Based on binding of TRAF3 to peptides from CD40 and lymphotoxin-beta receptor, members of the TNFR superfamily.
  • Structure:1FLL; Human TRAF3 binds CD40 peptide; contacts calculated at 3.5A
  • Structure:1RF3; Human TRAF3 binds lymphotoxin-beta receptor peptide; contacts calculated at 3.5A
  • Structure:1ZMS; Human TRAF3 binds Lmp1 protein from the Epstein Barr Virus; contacts calculated at 3.5A
  • Structure:2GKW; Human TRAF3 binds BAFF receptor peptide; contacts calculated at 3.5A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                    #
1FLL_B     38 TGLLESQLSRHDQMLSVHDIRLADMDLRFQVLETASYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCAR 117 human
1RF3_A      2 TGLLESQLSRHDQMLSVHDIRLADMDLRFQVLETASYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCAR 81  human
1ZMS_A      2 TGLLESQLSRHDQMLSVHDIRLADMDLRFQVLETASYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCAR 81  human
2GKW_A      2 TGLLESQLSRHDQMLSVHDIRLADMDLRFQVLETASYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCAR 81  human
AAH77157  383 LASLEQQLTRHDDLMSVHDVRLAEMDLKLQVLETASFNGTLIWKIRDYKRRKQEAVVSKTLSLYSQPFYTGYFGYKMCAR 462 zebrafish
XP_421378 377 TSMLETQLSRHDQMLSVHDIRLADMDLRFQVLETASYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCAR 456 chicken
XP_783477 232 IANNTEKVNYFDDQINMYSMRLAEHELRFQFQETASYDGTLIWKIKEFARRKRDADNGKTLSLYSQPFYTSRFGYKMCAR 311 purple urchin
Feature 1      #   # #        #                                     #  #    #         ####    
1FLL_B    118 VYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVF 197 human
1RF3_A     82 VYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVF 161 human
1ZMS_A     82 VYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVF 161 human
2GKW_A     82 VYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVF 161 human
AAH77157  463 VYLNGDGMGKGTHLSLFFVVMRGEYDALLQWPFKQKVTLMLMDQGPARKHLGDAFKPDPSSSSFRRPTGEMNIASGCPLF 542 zebrafish
XP_421378 457 VYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQKVTLMLMDQGPSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVF 536 chicken
XP_783477 312 IYLNGDGIGKGTHVSLFFVVMKGDYDALLPWPFSQKVTLMLLDQETGRRHLSDSFRPDPTSTSFQRPSTNMNIASGCPLF 391 purple urchin
Feature 1                               
1FLL_B    198 VAQTVLENGTYIKDDTIFIKVIVDTS 223 human
1RF3_A    162 VAQTVLENGTYIKDDTIFIKVIVDTS 187 human
1ZMS_A    162 VAQTVLENGTYIKDDTIFIKVIVDTS 187 human
2GKW_A    162 VAQTVLENGTYIKDDTIFIKVIVDTS 187 human
AAH77157  543 VAQTVLENGTYIKDDTIFIKVTVDTS 568 zebrafish
XP_421378 537 VAQTVLENGTYIKDDTIFIKVIVDTS 562 chicken
XP_783477 392 VSQSVLKDPAYVKEDTIFIKVVVDTT 417 purple urchin

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