Conserved Protein Domain Family
SR_TndX_transposase

?
cd03770: SR_TndX_transposase 
Serine Recombinase (SR) family, TndX-like transposase subfamily, catalytic domain; composed of large serine recombinases similar to Clostridium TndX and TnpX transposases. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. TndX mediates the excision and circularization of the conjugative transposon Tn5397 from Clostridium difficile. TnpX is responsible for the movement of the nonconjugative chloramphenicol resistance elements of the Tn4451/3 family. Mobile genetic elements such as transposons are important vehicles for the transmission of virulence and antibiotic resistance in many microorganisms.
Statistics
?
PSSM-Id: 239739
Aligned: 9 rows
Threshold Bit Score: 193.739
Created: 12-Jun-2006
Updated: 2-Oct-2020
Structure
?
Aligned Rows:
 
catalyticputative
Feature 1:catalytic nucleophile [active site]
Evidence:
  • Comment:Based on similarity with other members of the family.
  • Comment:When cleavage occurs, a phosphodiester bond is replaced by a phosphoserine bond between a 5' phosphate group at the DNA cleavage site and a Ser hydroxyl group of the resolvase.

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1              #                                                                        
AAB51419      8 TALYERLSRDDdl-----tgESNSITNQKKYLEDYARRNGFENIRHFTDDGFSGVNFNRPGFQSLIKEVEAGNVETLIVK 82  Clostridium perf...
NP_815940     9 AAIYCRLSSEDga-----dhESMSIGNQRALLAEYVQKQGWEIVDTYIDDGFSGTNFDRPGFQRMIADIEKGRINLVITK 83  Enterococcus fae...
ZP_00505016   9 TAIYCRLSRDDeq-----sgDSMSIENQRSMLTRYAKENGLEIIDWYIDDGWSGTNFDRPDFQRMKSDIEDGKIDIVLVK 83  Clostridium ther...
NP_470959     9 TALYCRLSRDDel-----qgDSNSIVNQKSILSKYAEEHRLLNTRFFIDDGVSGTTFDRPGLNEMLALIDEEKVSTVIVK 83  Listeria innocua...
AAF35174     12 VALYSRLSRDDgl-----dkESNSIANQREMLKRYAKENKFYVYDEYIDDGFSGTTFNRPALNRMFEDIEAGKVNVVLVK 86  Clostridium diff...
ZP_00371010   8 TALYERLSRDDfgkdddqqrESNSISNQKAMLEEFAARQGFTNIVHFTDDGISGTCFDRPGFLAMMKEVEAGNVEYLCIK 87  Campylobacter co...
NP_972777     9 TALYSRLSVGDedr---dggESNSIVNQKAFLERYARDKKLINIRHYIDDDESGRFFDRSAYTQMISDVEQGKIGIVIMK 85  Treponema dentic...
NP_347860    14 VYGYVRLSRDEd-------kEQASLENQKQIIRTYAKNNGYILVKIFEDDNVSGMTFDREGLNELKEVIENGNIDILLVK 86  Clostridium acet...
NP_348864     3 VVGYVRLSRDEdk------eNYSSIITQKNIIEEYSKNKNWTVNRIYVDDNCSGYTFERPEFLKMMYEIKERKIDVIVAK 76  Clostridium acet...
Feature 1                                                                             
AAB51419     83 DMSRLGRNYLQVGFYTEVLFPqknVRFLAIN---NSIDSnna-sdnDFAPFLNIMNEWYAKDTSNKIKAI 148 Clostridium perfringens
NP_815940    84 DLSRLGRNYIMCGQYTEIYFPerhVRYIALN---DGVDTlnqtssmDITPFKHILNDMYAKDISTKIKST 150 Enterococcus faecalis V583
ZP_00505016  84 DLSRLGRNQIETSLCIQVFFPqhdVRFIAVS---ENIDTakg--edDFMELRNLFNEWFVRDTSRKVKNG 148 Clostridium thermocellum A...
NP_470959    84 DMSRLGRDYLKVGLLTEIQLPekgVRFIAIN---DGVDSnqg--vsEFIAFRNVINEWYAKDTSKKIKAV 148 Listeria innocua Clip11262
AAF35174     87 DMSRLGRNNALFMYYVEEVFPdldVRFIAIN---DMVDTaqd--dnEIMPFKSVLNEYYARDISKKIRSS 151 Clostridium difficile
ZP_00371010  88 DMSRMGRDYLKVGQIMEILRQr-gVRLIAIN---DGVDSarg--ddDFTPFRNIMNEYYARDTSRKIRST 151 Campylobacter coli RM2228
NP_972777    86 DMTRWGRDYLQVGNAMEIFRRn-nVRFIAIN---NGIDSidq-ntlEFAPFINIMSEWYARDISKKVKTG 150 Treponema denticola ATCC 3...
NP_347860    87 DLSRIGRHKAYSALFMEELRSk-kIKVISIA---ENLDNmde-nndILIGFKQILNEQYAKDISRKIRAA 151 Clostridium acetobutylicum...
NP_348864    77 DLSRIGRNNGKVLVFIDKLKEk-gIRLILVEeatGGLDLled--nyDILGIKTWYNEMYVKDISRKIRAS 143 Clostridium acetobutylicum...

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap