Conserved Protein Domain Family
SR_IS607_transposase_like

?
cd03769: SR_IS607_transposase_like 
Serine Recombinase (SR) family, IS607-like transposase subfamily, catalytic domain; members contain a DNA binding domain with homology to MerR/SoxR located N-terminal to the catalytic domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. This subfamily is composed of proteins that catalyze the transposition of insertion sequence (IS) elements such as IS607 from Helicobacter and IS1535 from Mycobacterium, and similar proteins from other bacteria and several archaeal species. IS elements are DNA segments that move to new sites in prokaryotic and eukaryotic genomes causing insertion mutations and gene rearrangements.
Statistics
?
PSSM-Id: 239738
Aligned: 18 rows
Threshold Bit Score: 143.556
Created: 12-Jun-2006
Updated: 2-Oct-2020
Structure
?
Aligned Rows:
 
catalyticcatalytic
Feature 1:catalytic nucleophile [active site]
Evidence:
  • Comment:Based on similarity with other members of the family.
  • Comment:When cleavage occurs, a phosphodiester bond is replaced by a phosphoserine bond between a 5' phosphate group at the DNA cleavage site and a Ser hydroxyl group of the resolvase.

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1              #                                                                        
NP_126098    64 AVIYARVSSSDQRKDLERQVEYLLNYCtakgyklVDTITDIASGLNt-rRKGLQKLFKLVserkvDVVLVTYKDRLTRFG 142 Pyrococcus abyss...
AAT72877     55 NVVYARVSTQKQKQDLQNQIENCISFInakgisvDSIYSDIKSGMSl-dRKGFMELLNAVmafkiKAVYISYKDRLARLS 133 Helicobacter pylori
NP_622372    69 TYIYARVSTPKQKRDLENQIELLKQFCfnngykiHGVFSDIASGISfekRNEFFKMLDDVlagkvEMVIIAYKDRLSRAG 148 Thermoanaerobact...
NP_622349    60 VVLYARVSTKKQEEYLKNQIRRLEEYAnsq-gwqYEVISEIASGVNe-nRRGLLKLLNKIkrgevEKVVVEYPDRLARFG 137 Thermoanaerobact...
ZP_00206614  26 TVCYARVGSSDQKDGLQRQADRLRAFAinmgvekPEVVTETGSGMNd-kRRKLNRLLADPt---vGTLIVEHRDRLARMN 101 Bifidobacterium ...
NP_579752    69 IIGYARVSSHTQKDYLERQVKAIEQYAker-gwqVQILTDIGSGLNe-nRKNYRKLLELVakrevSKVIITHPDRLTRFG 146 Pyrococcus furio...
YP_474808    66 VVLYARVSSRGQKPDLERQIARLVNLYp-----gAEVVGEVGSGLNf-kRPKFLALLERVragdvGTIVVAHRDRLCRFG 139 Synechococcus sp...
Q60329       64 IIGYARVSFNAQKDDLERQIQLIKSYAeen-gwdIQILKDIGSGLNe-kRKNYKKLLKMVmnrkvEKVIIAYPDRLTRFG 141 Methanocaldococc...
ZP_00513619  25 ACIYARVSSAENKDNLDRQAELLKDYSiargykiYKIVKEIGSVLNd-dRKQLGKILVDPn---yNILVVEHKDRLARFG 100 Crocosphaera wat...
NP_342783    56 VILYARVSSSTQKDDLANQVKYLEEQVke----yDQVITDIGSGLNm-kRKGFLKLLRMIlnnevSRVVIAYPDRLVRFG 130 Sulfolobus solfa...
Feature 1                                                                 
NP_126098   143 YEYLEYFFSQFDVRIEAIHgee-kkDAQQ-ELVEDLIAIITSFAGKLYGLRSHKKKKF 198 Pyrococcus abyssi GE5
AAT72877    134 YELVEKLFSDYGTKIVIINqce-siSLEQ-ELFEDIMQTIHSFSMKMYSKRRIAKKLL 189 Helicobacter pylori
NP_622372   149 FELFKHLFRKFNTEIVVVSevg-neKLDSqEIIEEIISLLHCYSMKFYSKGKIQKIRK 205 Thermoanaerobacter tengcongensis MB4
NP_622349   138 FEYLKFFMESLGVELIVLSgeenkeEMNK-ELAEDLIAIVTSFAARIYGQRGGKKHAG 194 Thermoanaerobacter tengcongensis MB4
ZP_00206614 102 AGLVESALKAQGRRIIVVDd----tELDD-DLVRDMTEVLTSFCARLYGRRAAKHRAE 154 Bifidobacterium longum DJO10A
NP_579752   147 FKTLEFFFKENGAEIIIITdk---eKSPReELIEDLTTIISHFAGKLYGMRSHKYKKL 201 Pyrococcus furiosus DSM 3638
YP_474808   140 FEFVEWYCRQYGCEILVLDdd---hLSPQqELVEDILTILHCFSSRLYGLRKYRAAIE 194 Synechococcus sp. JA-3-3Ab
Q60329      142 FETLKEFFKSYGTEIVIINkk---hKTPQeELVEDLITIVSHFAGKLYGMHSHKYKKL 196 Methanocaldococcus jannaschii
ZP_00513619 101 TNYIELLLKELSKKLEIVNh----sEDKQdELMEDLIAIITSFCSQIYGLKRSKRKTE 154 Crocosphaera watsonii WH 8501
NP_342783   131 FEILEEVCKAHGCEIVVINq----eDKEE-ELVEDLVSILLSFSGKLHGMRSHKYEKV 183 Sulfolobus solfataricus P2

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap