Conserved Protein Domain Family
proteasome_beta_bacterial

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cd03765: proteasome_beta_bacterial 
Bacterial proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Statistics
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PSSM-Id: 239734
Aligned: 25 rows
Threshold Bit Score: 373.837
Created: 8-May-2006
Updated: 2-Oct-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
ZP_01017276   2 TYCVAIRVGEGLVMLSDTRTNAGIDSISKFKKMFVWDVPGERSLCMMTAGNLSITQSVMTLLQERIDDDTFTGetiltaa 81  Parvularcula ber...
YP_529344     2 TYCLGIKIDESIIMLSDSRTSAGVDNISTYSKMWRYSVPGQRQFVLCSAGNLATTQAVIAVLERDIKTKAPVNllt--vv 79  Saccharophagus d...
BAC88540      2 TYCLGLLMEAGLVLAADSRTNAGVDYVSSYRKVFDFSMPGERVVFILTSGNLSITQSVINLLRQDLHKEGESLht---mp 78  Gloeobacter viol...
BAE49705     10 SYCLGMRLKAGLVFVSDSRTNAGVDSVATFKKSYVFDGAEDRVIVILTAGNLAITQSVISLLEERLHGPDRSRsly-gvk 88  Magnetospirillum...
BAC07712     12 TYCLGILTTSGLVMAADSRTNAGVDYISTYQKLFDFSVPGERVIVICTAGNLSITQEVLTLIRRDLKAQLEHSlnt--lp 89  Thermosynechococ...
YP_400052     2 TYCLGIVTQAGLIMAADSRTNAGIDYISTYQKLFDFSLPGDRTIVICCSGNLSITQAVLSQLRRDLAGHSDINlhs--lp 79  Synechococcus el...
YP_476331     2 TYCLGIITRFGLVMAADSRTNAGVDYVSTYQKLFDFSVPEERVILICTSGNLSITQGVLTEVQRDLRQQESSNlht--fp 79  Synechococcus sp...
YP_432291    70 TYCLAISVDAGLVFASDSRTNAGVDNVNTYPKMYSFNVPEKAFVTVLTSGNLATTQAVVRRISRDLEDPSGEGgla-acn 148 Hahella chejuens...
ZP_01102196   2 TYCLAITLEEGLVFCSDSRTNAGPDRVSKYSKMHRFSVPYERSMVILTAGNLATSQAVIAQIQRDLEEDTELNifn--ar 79  gamma proteobact...
YP_114486     2 TYCLAIKVDQGLVFASDSRTHAGVDYASVYSKMYRFDLHSDRLMIVLAAGNLATTQAVINLIRRDLENPGALYnln-tva 80  Methylococcus ca...
ZP_01017276  82 NLYRCAEVIASTMTEVMNRYslgis-nagesAASSIILSGQTKGDSPRLFMIYSAGNFIEATDDTTFFQIGGFKYGKPIL 160 Parvularcula ber...
YP_529344    80 DMHQASEYIGRVSVACQKQNtgg-----gpvFETTFLLAGEILGASNGLYMIYSQGNFIASSEQVPYLQIGETKYGKPIL 154 Saccharophagus d...
BAC88540     79 TMFSVCRYIGHKVRQVEQQDrpvle-kdridFHVSLIVAGQIKGEEPALYLVYTQGNFIQATEETPFVQIGETKYGKPIL 157 Gloeobacter viol...
BAE49705     89 SMYEVARLVGDTLREVHAIDgahlk-shgadFIASLIVGGQIQGRRMRLFNVYAAGNFIEASDETPYFQIGETKYGKPII 167 Magnetospirillum...
BAC07712     90 NMYEVARYVGHKLRQVSESHrswla-kdnidYQCTFLVGGQIRGEEPYLYLIYSQGNFLQATPETPFLQIGETKYGKPIL 168 Thermosynechococ...
YP_400052    80 TMYDLARYLGQKVRQLQESDrdwlk-qdgidFYCNFLLGGQIRGGPIELYLVYGQGNCIHATPETPYLQIGETKYGKPIL 158 Synechococcus el...
YP_476331    80 HLYDVARYLGSKIRYIQEQDrpwle-kdgidAQCSLLLGGQIRGEEPALFLIYSQGNCIQATPETPFLQVGETKYGKPIL 158 Synechococcus sp...
YP_432291   149 DMSDAARYIGALSVELKNYYekdlk--qganFDCTLIVGGQYKDGPHEIFMVYPEGNYIQSSPYAPYLQIGETKYGKPIL 226 Hahella chejuens...
ZP_01102196  80 YVSDVADYIGEISLKEQQKYakkggpnagfnASATFILGGQIKGHAPELYMIYPEGNHITASDLYPYLQIGETKYGKPIL 159 gamma proteobact...
YP_114486    81 YLYDAASYIGETSVRVQEQHasamq-rcgisGEASFILGGQIQGQPPEIYLIYPQGNYITVSPDNPYLQIGETKYGKPIL 159 Methylococcus ca...
ZP_01017276 161 DRVISTETTLEDAKTAAFLSMDSTLRSNLSVGMPLDLCVLEADtl-sfSEFRRIEAEDQNFHALSEAWSNAIRDAFVSMR 239 Parvularcula ber...
YP_529344   155 DRVAQGKMTTDRAVLCGLVSMDATIRSNLTVGPPIEVTVLTAGsl-qpGRYLKLEEDNEYMRNLRITWNKLMEEAVGQLQ 233 Saccharophagus d...
BAC88540    158 DRAFNYRSSLKIAALCSLLSMDSTMISNLSVGSPVDLLVYERDtf-qiAQCCRLQENDPFWVEMRRAWQQSLQNAFHNLP 236 Gloeobacter viol...
BAE49705    168 ERVITVDTSLEEATKCALVSFDSTIKSNISVAPPLDVTLVPADgc-raSVRYRVADDDPYFQMVRRAWGEGLRKLFTQLP 246 Magnetospirillum...
BAC07712    169 DRTLRFDTPVDAAAKYALLSLDSTMKSNISVGPPLDLILYRTDsf-eiCHRAEFVLGDPFLAKVRQFWEASLRRVFEEMP 247 Thermosynechococ...
YP_400052   159 DRTISFDTSLDMAAKCALMSLDSTMRSNLSVGPPLNLARYERDsl-vaPMLVQFPAGHEYLVEMRRRWEISLKDAFMRLP 237 Synechococcus el...
YP_476331   159 DRTLSYETSLADAAKCALLSIDSTMKSNISVGPPIDLVMVQADqf-kvTHRLRLRTGDPYLAKMRKLWESALKQAFDQMP 237 Synechococcus sp...
YP_432291   227 DRVIRSNSSLEAAARCALVSMDSTMRSNLSVAPPFDLLVYETGkl-epAHVMHLKLNSPYYATLRKQWSEGLKALFNELP 305 Hahella chejuens...
ZP_01102196 160 DRIIRSDTPVETAMRCALVSVDSTMRSNATVGPPLECLFYRKDslqphDEYCILEEGHPYLSDLRQSWDDNIRLAFDNLP 239 gamma proteobact...
YP_114486   160 DRMIAPATTLEDAARCALVSIDSTMRSNISVGPPVEVAIYRRNsf-vvGHYLHLDYSSPLYALIQKQWAEGIRNAFTLLP 238 Methylococcus ca...
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