1R5O,3E1Y,3J5Y,4CRN,3E20


Conserved Protein Domain Family
eRF3_C_III

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cd03704: eRF3_C_III 
Click on image for an interactive view with Cn3D
C-terminal domain of eRF3
This model represents the eEF1alpha-like C-terminal region of eRF3, which is homologous to the domain III of EF-Tu. eRF3 is a GTPase which enhances termination efficiency by stimulating eRF1 activity in a GTP-dependent manner. The C-terminal region is responsible for translation termination activity and is essential for viability. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions: N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM is a non-pathogenic prion-like protein with the property of aggregating into polymer-like fibrils.
Statistics
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PSSM-Id: 294003
Aligned: 45 rows
Threshold Bit Score: 118.427
Created: 6-Mar-2006
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
heterodimer
Conserved site includes 18 residues -Click on image for an interactive view with Cn3D
Feature 1:heterodimer interface [polypeptide binding site]
Evidence:
  • Structure:3J5Y; Homo sapiens Erf1-Erf3 heterodimer, contacts at 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                           ######## # #    # # #                    ## #                
1R5O_A       360 HATTrFIAQIAILEl---pSILTTGYSCVMHIHTAVEEVSFAKLLHKLDK-TNRKSkkppMFATKGMKIIAELETQTPVC 435 fission yeast
3J5Y_B       320 HSGRtFDAQIVIIEh---kSIICPGYNAVLHIHTCIEEVEITALICLVDKkSGEKSktrpRFVKQDQVCIARLRTAGTIC 396 human
XP_642353    434 PVVSeIEAIVYILDmpeerRLFTPSFSAIFHAHTAVEDVTVKSLIATIDTkTSTEIkqkpTFCKVGDAVKCRLVLGRAVC 513 Dictyostelium d...
AAF74406     476 DVAQkVIAKIRIVPsg--pELITAGYEAMCHIHTETVPVSVEKLRTLQIP-GRELEkn-pRFIKRGCLAEVILKFDHPIC 551 Trichomonas vag...
EPY23017     295 RAVEyFQARVVILDv---kNIICAGSRFMLHIHAAQEEASFHKLLAKVDKkTGEVTekepVCAKAGDVVMARIEVDRPLV 371 Strigomonas cul...
XP_005831863 447 RPCRwFDATVQILDy---pTIICAGYSCVLHIHSAIEECTFYKLIGILDKkTRQIKqkdpKFCKQGDSVIVRVKMHRSVC 523 Guillardia thet...
XP_005712186 418 SYTHsFIARLMVLEh---kSIICAGYSAVIHIHSAVEEFTVSKLLAELDKkGKAKQkn-pKFVKPGMRCLVQLKMSQPIC 493 carragheen
XP_005832152 332 CEQRgIEVKVNILDc---kSIIAAGYSCMFHCHSIATDCTWESVISVIDKqLGEVKr---PFVRRGQSAVLRLEFSSEIC 405 Guillardia thet...
EZG56822     352 PVTEyIEVQMVLVDmlehkPLMTAGYRAIFHAHTMSEECEIVSIVETMDKaSKKKTrk-pAFAKAGQVVTCRIRLDSTQA 430 Gregarina nipha...
ETW17884     445 SVVHeFIGRVAIVEllehkPIITAGYFCIFHAHTACEEIQFVEMLEVIDKkSKKKKtk-pKFIKSDCIVTAHFLLSNPVC 523 Plasmodium falc...
Feature 1                       # #            
1R5O_A       436 MERFEDYQYMGRFTLRDQGTTVAVGKVVKI 465 fission yeast
3J5Y_B       397 LETFKDFPQMGRFTLRDEGKTIAIGKVLKL 426 human
XP_642353    514 LEEFTTNPQLARFTIRDSTKTIAFGKVINI 543 Dictyostelium discoideum AX4
AAF74406     552 VEVAKDFPQLGRFIIRKEGFTTIVGLVDKL 581 Trichomonas vaginalis
EPY23017     372 MEAHKDFDKMGRFMLRDEGKTIAIGLVTKL 401 Strigomonas culicis
XP_005831863 524 VERYKDFSQMGRFMLRDQGNTIGVGIINDL 553 Guillardia theta CCMP2712
XP_005712186 494 VEPYDVFPQLGRFMIRDEGKTVAVGTVARL 523 carragheen
XP_005832152 406 VETYKDFSQLGRFVLREDGLTIGIGIVLNL 435 Guillardia theta CCMP2712
EZG56822     431 LEIFPDNPQLGRFTLRDEGKTIAIGKIMKI 460 Gregarina niphandrodes
ETW17884     524 VEVYDNLPQLGRFTLRDQGKTIAIGKILEL 553 Plasmodium falciparum 3D7

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