3WND,4AC9


Conserved Protein Domain Family
SelB_II

?
cd03696: SelB_II 
Click on image for an interactive view with Cn3D
Domain II of elongation factor SelB
This subfamily represents the domain of elongation factor SelB that is homologous to domain II of EF-Tu. SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation.
Statistics
?
PSSM-Id: 293897
Aligned: 30 rows
Threshold Bit Score: 101.449
Created: 23-Aug-2004
Updated: 2-Oct-2020
Structure
?
Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
3WND_A    193 ARIFIDHAFNvtGKGCVVLGVVKQGISKDKDKTKifpldRDIEIRSIQSHdVDIDSAPAGTRVGMRLKNvqak-dieRGF 271 Methanosarcina mazei
AAC07099  180 LRIFVDSAFVvkGYGTVLRGSCFEGEVKEGDKVVvepigVISRVRKMQNHgVFVKKAVAGERIALNLPEvdak-kvkRGF 258 Aquifex aeolicus VF5
CAB53235  180 PRLSIDRVFSikGFGTVVTGTLIEGKMNLDDDMMiypgeIKTKIRSLQVHgESQKIAYAGQRVAINLANvrve-eieRGD 258 Eubacterium acidam...
Q46455    180 VRLPIDRVFSvtGFGTVVTGTLWSGTIKVGDELEvqpegLKTRARNLQVHgRTVKEARAGQRVAVNLAGiete-avhRGS 258 Moorella thermoace...
AAP77338  194 FLYYIDRSFSikGAGCVVTGSVLSGECCVGDKLYaydikQEVAVRGIQIHdKNATKATPSHRVALNLSGishh-qlkRGF 272 Helicobacter hepat...
CAE09950  178 FRYYIDRSFSikGAGCVVSGTVLSGKVEQNQKIWccelqKPLAIRGIEVHgSYTQSALPSQRAALNLTGvsht-eleRGF 256 Wolinella succinog...
NP_972566 178 PFLYVDRVFVlkGIGTTVTGTLRGKGLHTGDSLQiypsnEECRIKSIQNHhKDVEKIEPGTRTALNLKLgekt-nleRGM 256 Treponema denticol...
BAD40058  180 ARLPIDRAFVrpGFGTVVTGTLVGGVIRQGDRMEllplgIEVRVRGLQVHgEPVEQAQAGQRVAVNLAGiers-dvrRGH 258 Symbiobacterium th...
AAW36005  175 FHYYIDRVFSlkGIGTVVTGSLNEGSITLNEKIIcldtqKELIVKNIQNHdTNLEQIKACNRVALSLNCdyk--elkKGY 252 Campylobacter jeju...
AAY89283  186 PRLPVDRVFTlpGIGTIVTGTLFGGTLKRGQSVVvqpsgRTTRLRRIQSHaQDVDTSGPATRTALNLTDldasddvhRGE 265 uncultured bacteri...
3WND_A    272 IISD 275 Methanosarcina mazei
AAC07099  259 LILK 262 Aquifex aeolicus VF5
CAB53235  259 VLAK 262 Eubacterium acidaminophilum
Q46455    259 SLLT 262 Moorella thermoacetica
AAP77338  273 LLSQ 276 Helicobacter hepaticus ATCC 51449
CAE09950  257 LLTQ 260 Wolinella succinogenes
NP_972566 257 LLAE 260 Treponema denticola ATCC 35405
BAD40058  259 VLCA 262 Symbiobacterium thermophilum IAM 14863
AAW36005  253 LLSK 256 Campylobacter jejuni RM1221
AAY89283  266 VVTI 269 uncultured bacterium BAC10-10
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap