1F60,1SKQ,4C0S,3WXM,4CXG


Conserved Protein Domain Family
EF1_alpha_II

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cd03693: EF1_alpha_II 
Click on image for an interactive view with Cn3D
Domain II of elongation factor 1-alpha
This family represents domain II of elongation factor 1-alpha (EF-1A) that is found in archaea and all eukaryotic lineages. EF-1A is very abundant in the cytosol, where it is involved in the GTP-dependent binding of aminoacyl-tRNAs to the A site of the ribosomes in the second step of translation from mRNAs to proteins. Both domain II of EF-1A and domain IV of IF2/eIF5B have been implicated in recognition of the 3'-ends of tRNA. More than 61% of eukaryotic elongation factor 1A (eEF-1A) in cells is estimated to be associated with actin cytoskeleton. The binding of eEF-1A to actin is a noncanonical function that may link two distinct cellular processes, cytoskeleton organization and gene expression.
Statistics
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PSSM-Id: 293894
Aligned: 51 rows
Threshold Bit Score: 124.608
Created: 23-Aug-2004
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 11 residues -Click on image for an interactive view with Cn3D
Feature 1:18S rRNA binding site [nucleic acid binding site]
Evidence:
  • Structure:4CXG, Oryctolagus cuniculus EF1 alpha bound to 18S rRNA, contacts 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                 ####### #                                #                    # #   
1F60_A    240 TDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPag-----vTTEVKSVEMHHEQLEQGVPGDNVGFNVKnv- 313 baker's yeast
4CXG_A    229 VDKPLRIPVQNVYSIPGAGTVPVGRVETGVLRVGDKVVFMPpg-----vVGEVRSIEMHYQQLQQAEPGDNIGFAVRgv- 302 Aeropyrum pernix K1
BAA12288  239 IDKPLRMPIDSIHKIPGIGMVYTGRVSTGAIKPGMVVSSQPtg-----vVAEVKTLEIHKQSRAAVVSGENCGVALKaas 313 Glugea plecoglossi
AAV34148  261 IDAPVRVPISGIYKIKGVGDVLAGRVEQGIIKPNQEVVFMPthtaanqcTGKVFTIEMHHKRHEQAGPGDNVGMNVKgld 340 Helicosporidium sp...
NP_584794 276 NDKPLRMPITKVCSIAGVGKIFTGRVEYGTITPNLKITIQPag-----vVGETRSVEIHNKPRSMIPCGENCGVALKggv 350 Encephalitozoon cu...
BAC15534  216 VDKPLRMPIVQKHKISGIGYVYTGRIDSGSATPNMPVLIEPag-----vVTEIKSLEIHREAKTKVIAGENCGVAFKdav 290 Nosema bombycis
Q8TRC4    221 STLPLRIPVEDAYTISGIGTVPVGRVETGVMKKGDKVIFMPgg-----aGGEVKSIEMHHEEIPQAYPGDNIGWNVRgi- 294 Methanosarcina ace...
EAR84547  227 KQKPLRMPIKDIYKIGGVGTVPVGRVETGILKPGMMIRFSPsg-----lLAECSQFEMMHHPMEEAIPGDNMGFSIKgi- 300 Tetrahymena thermo...
ABA01120  255 TDAPLRLPISGAYKIKGVGDVLAGRVEQGVVKPGDEVIFLPthttanpcTGKVFTVEMHHKRVEKAGPGDNVGMNIKgld 334 Chlamydomonas incerta
ABF82157  241 VDAPMRCPISGIYKIKGVGDVLAGRVEQGIVNPGEDVIFMPthtpgtpcEGKIFTVEMHHKRVDAAKPGDNVGMNIKgld 320 Guillardia theta
Feature 1                        
1F60_A    314 --svKEIRRGNVCGDAKND 330 baker's yeast
4CXG_A    303 --skSDIKRGDVAGHLDKP 319 Aeropyrum pernix K1
BAA12288  314 qgnpALIKPGHVFSNTKDS 332 Glugea plecoglossi
AAV34148  341 --knNMPRTGDVMIIKSDA 357 Helicosporidium sp. ex Simulium jonesii
NP_584794 351 igeiDKVDAGHVISANDEN 369 Encephalitozoon cuniculi GB-M1
BAC15534  291 kgdfNQVKPGNVISEAKNK 309 Nosema bombycis
Q8TRC4    295 --gkNDVRRGDVCGHTDNP 311 Methanosarcina acetivorans
EAR84547  301 --etSEIQTGNVASDAERD 317 Tetrahymena thermophila SB210
ABA01120  335 --kgNMPRTGDVMILKADQ 351 Chlamydomonas incerta
ABF82157  321 --knNMPRSGDVMVYKKDG 337 Guillardia theta

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