2H5E,3VQT,3TR5


Conserved Protein Domain Family
RF3_II

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cd03689: RF3_II 
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Domain II of bacterial Release Factor 3
This subfamily represents domain II of bacterial Release Factor 3 (RF3). Termination of protein synthesis by the ribosome requires two release factor (RF) classes. The class II RF3 is a GTPase that removes class I RFs (RF1 or RF2) from the ribosome after release of the nascent polypeptide. RF3 in the GDP state binds to the ribosomal class I RF complex, followed by an exchange of GDP for GTP and release of the class I RF. Sequence comparison of class II release factors with elongation factors shows that prokaryotic RF3 is more similar to EF-G whereas eukaryotic eRF3 is more similar to eEF1A, implying that their precise function may differ.
Statistics
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PSSM-Id: 293890
Aligned: 16 rows
Threshold Bit Score: 163.597
Created: 23-Aug-2004
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2H5E_A   296 FTGFVFKIQANMDpkHRDRVAFMRVVSGKYEKGMKLRQvRTAKDVVISDALTFMAGDRSHVEEAYPGDILGLhNHGTIQI 375 Escherichia coli BW...
AAF11117 306 FAGFIFKLQANMSkqHRDRTAYMRVMSGHFERGMDVTHtRTGRKLRLSQAHTLFAQDREKVEEAYPGDIVGLvNPGVFQI 385 Deinococcus radiodu...
BAB76078 299 FSGFVFKLQANMDpkHRDRVAFIRVCTGKFEKDMTVNHaRTGKIVRLSRPQKLFAQERESIDVAYPGDVIGLnNPGVFAI 378 Nostoc sp. PCC 7120
BAB80317 294 FSAFVFKIQANMNkaHRDRLAFMRICSGKFEKGKDVFHvQGGKKVKLAQPQQFLAQDREVVEEAYAGDIIGVfDPGIFSI 373 Clostridium perfrin...
AAN49932 359 FSGFIFKVQANMNrqHRDRIAFLRVTSGKFERGLNVLHgRLGKSVKLSSSFAFFGQDRNTVDEAYPGDIIGLvNPGTYAI 438 Leptospira interrog...
CAF24297 304 FSAYVFKLQANMDkrHRDSMAFLRICSGRFDRDLVVKHhRLGKEVRLSRPHGMVAGERTTLDIAYAGDVIGViNPGVFAI 383 Candidatus Protochl...
BAB51819 290 MTSFVFKIQANMDpnHRDRIAFVRVCSGKLERGMKAKLvRTGKPMSLSAPQFFFARTRVTADEAFAGDVVGIpNHGTLRI 369 Mesorhizobium loti ...
AAM72054 293 LSGFVFKIHANLDpnHCDRTAFFKICSGRFERNKFYQHtRLGKKVRFSNPTQFMAQEKNVIDEAWPGDVIGLyDNGSLKI 372 Chlorobium tepidum TLS
CAE79970 300 FSGFVFKIQANMDkrHRDRIAFIRICSGKFERGMKVKHsRHDKELRLSYASQFVAADKETVDDAYAGDIVGVgDTGNFAI 379 Bdellovibrio bacter...
Q03GI2   293 FSGFVFKIQANMNpnHRDRIAFLRICSGEFDRGMDVTLnRTGKTLRLSNSTQFMADTRENVETAVAGDIIGLyDTGNFQI 372 Pediococcus pentosa...
2H5E_A   376 GDTFTQG 382 Escherichia coli BW2952
AAF11117 386 GDVVSVD 392 Deinococcus radiodurans R1
BAB76078 379 GDTIYTG 385 Nostoc sp. PCC 7120
BAB80317 374 GDTLCLN 380 Clostridium perfringens str. 13
AAN49932 439 GDIVASS 445 Leptospira interrogans serovar Lai str. 56601
CAF24297 384 GDTISLT 390 Candidatus Protochlamydia amoebophila UWE25
BAB51819 370 GDTLTEG 376 Mesorhizobium loti MAFF303099
AAM72054 373 GDTLTEG 379 Chlorobium tepidum TLS
CAE79970 380 GDCVYAS 386 Bdellovibrio bacteriovorus HD100
Q03GI2   373 GDTIYAG 379 Pediococcus pentosaceus
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