1KK3,1S0U,3J81,4RCY,2AHO


Conserved Protein Domain Family
eIF2_gamma_II

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cd03688: eIF2_gamma_II 
Click on image for an interactive view with Cn3D
Domain II of the gamma subunit of eukaryotic translation initiation factor 2
This subfamily represents domain II of the gamma subunit of eukaryotic translation initiation factor 2 (eIF2-gamma) found in eukaryota and archaea. eIF2 is a G protein that delivers the methionyl initiator tRNA to the small ribosomal subunit and releases it upon GTP hydrolysis after the recognition of the initiation codon. eIF2 is composed of three subunits, alpha, beta and gamma. Subunit gamma shows strongest conservation, and it confers both tRNA binding and GTP/GDP binding.
Statistics
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PSSM-Id: 293889
Aligned: 30 rows
Threshold Bit Score: 125.757
Created: 23-Aug-2004
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 9 residues -Click on image for an interactive view with Cn3D
Feature 1:tRNA binding site [nucleic acid binding site]
Evidence:
  • Structure:3J81; Saccharomyces cerevisiae 48s Preinitiation Complex, contacts 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                 ##                                                            ### ##
1KK3_A    204 DPNKPPKMLVLRSFDVNKPGt-pPEKLVGGVLGGSIVQGKLKVGDEIEIRPGVpyeehg-rikyePITTEIVSLQAGgQF 281 Pyrococcus abyssi
3J81_k    308 DFMISPRLIVIRSFDVNKPGa-eIEDLKGGVAGGSILNGVFKLGDEIEIRPGIvtkddkgkiqckPIFSNIVSLFAEqND 386 Saccharomyces cere...
4RCY_A    208 DLSQKPVMLVIRSFDVNKPGt-qFNELKGGVIGGSIIQGLFKVDQEIKVLPGLrvekqg-kvsyePIFTKISSIRFGdEE 285 Sulfolobus solfata...
2AHO_A    207 DLSQKPVMLVIRSFDVNKPGt-qFNELKGGVIGGSIIQGLFKVDQEIKVLPGLrvekqg-kvsyePIFTKISSIRFGdEE 284 Sulfolobus solfata...
AAG20211  206 DPSADPLLYAARSFDINRPGt-eWGGLLGGVIGGSLVDGELEAGDELELRPGReveegg-ktewrPVTTDVRSLQAGgED 283 Halobacterium sp. ...
O26361    203 DVDKPARMYVARSFDINKPGa-dPEHLAGGVIGGSLVQGRLRVGDEIEIRPGIqvkkdg-kqtwmSLHSTITGLVAGgEE 280 Methanothermobacte...
AAM07045  237 KVDKPASMLIARSFDINKPGa-sIDEIRGGVIGGTLTEGVLHPGDELEIRPGIkvtteg-stkwiPIVTTISSIYAGpTK 314 Methanosarcina ace...
EAN80270  255 QLNCPARMTVVRSFDINKPGevdIETLRGGVAGGTVIQGVLRVNQIVEIRPGQvhtqtggtfsctPLRTRALTLKAEdNS 334 Trypanosoma brucei
CAC11467  203 NENDDPIMYIARSFDINRPGt-pVSELKGGVIGGSLTQGEFALGDEIEIVPGIqttkgn-ktvwnNVTTEVVSLMAGkYS 280 Thermoplasma acido...
AAM02660  207 DLDAPFRMYIARSFDVNKPGt-rPSDLKGGVIGGAIVQGEVEIGDEIEIRPGIrveryg-rtewePVYTEVVSLHANvTP 284 Methanopyrus kandl...
Feature 1                          ##            
1KK3_A    282 VEEAYPGGLVGVGTKLDPYLTKGDLMAGNVVGKPG 316 Pyrococcus abyssi
3J81_k    387 LKFAVPGGLIGVGTKVDPTLCRADRLVGQVVGAKG 421 Saccharomyces cerevisiae S288c
4RCY_A    286 FKEAKPGGLVAIGTYLDPSLTKADNLLGSIITLAD 320 Sulfolobus solfataricus P2
2AHO_A    285 FKEAKPGGLVAIGTYLDPSLTKADNLLGSIITLAD 319 Sulfolobus solfataricus
AAG20211  284 VDSASPGGLLGVGTGLDPSLTKGDALAGQVAGPPG 318 Halobacterium sp. NRC-1
O26361    281 MEEVGPGGLVGVGTLLDPALTKADSLSGSVAGEPG 315 Methanothermobacter thermautotrophicus str. Delta H
AAM07045  315 VEEATPGGLLAVGTYLDPTLTKGDSLTGQIAGVPG 349 Methanosarcina acetivorans C2A
EAN80270  335 LQYAIPGGLIAVGTTLDPTLTRQDKMVGHMIGEEG 369 Trypanosoma brucei
CAC11467  281 YDRIRPGGLAAIGTKLDPFLTKGDAFTGRIAGHVG 315 Thermoplasma acidophilum
AAM02660  285 VERARPGGLVGIGTKLDPTMTKADRLSGQVAGEPD 319 Methanopyrus kandleri AV19

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