Conserved Protein Domain Family
ClC_3_like

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cd03684: ClC_3_like 
ClC-3-like chloride channel proteins. This CD includes ClC-3, ClC-4, ClC-5 and ClC-Y1. ClC-3 was initially cloned from rat kidney. Expression of ClC-3 produces outwardly-rectifying Cl currents that are inhibited by protein kinase C activation. It has been suggested that ClC-3 may be a ubiquitous swelling-activated Cl channel that has very similar characteristics to those of native volume-regulated Cl currents. The function of ClC-4 is unclear. Studies of human ClC-4 have revealed that it gives rise to Cl currents that rapidly activate at positive voltages, and are sensitive to extracellular pH, with currents decreasing when pH falls below 6.5. ClC-4 is broadly distributed, especially in brain and heart. ClC-5 is predominantly expressed in the kidney, but can be found in the brain and liver. Mutations in the ClC-5 gene cause certain hereditary diseases, including Dent's disease, an X-chromosome linked syndrome characterised by proteinuria, hypercalciuria, and kidney stones (nephrolithiasis), leading to progressive renal failure. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. This domain is found in the eukaryotic halogen ion (Cl- and I-) channel proteins, that perform a variety of functions including cell volume regulation, the membrane potential stabilization, transepithelial chloride transport and charge compensation necessary for the acidification of intracellular organelles.
Statistics
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PSSM-Id: 239656
Aligned: 25 rows
Threshold Bit Score: 447.053
Created: 3-May-2006
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
Feature 1:putative Cl- selectivity filter
Evidence:
  • Comment:Based on sequence similarity to other members of the family.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                     
P51792     78 GLASGALAGLIDIAADWMTDLKEGIClsalwynheqccwgsnettfeerd-------kcpqwktwaeliigqaegpgsyi 150 Norway rat
CAA21887   44 GIFIGLTAALLNALASLLNSFREGYCtvnilfdkqtccstlted--------------------yecqefffwrnnhsvf 103 fission yeast
AAO73005  108 GVIIGVSAALISIITTWLSDIKLGHCttgwwlsrkfcclevsd---------------------eleacaewknwggvep 166 Cryptococcus neofo...
XP_460866  85 GIVIGLIAGCLNIITAWLTSIRMGHCsgnfylnetfccwdqd-----------------------edkctnwvswsqigf 141 Debaryomyces hanse...
XP_503716 115 GIAVGLIAACIDITSHWIADVRLGYCqnafylsrdsccsgiat----------------------ndpcpgwiewsssyf 172 Yarrowia lipolytic...
P37020     83 AIVIGCIAGFLQVFTETLVNWKTGHCqrnwllnksfccngvvnevtstsn-------lllkrqefeceaqglwiawkghv 155 baker's yeast
XP_962366 131 GAAIGVNAAFLNIITEWLADIKLGHCktafylnenfccwged------------------------ngcddwqkwtgfsp 186 Neurospora crassa ...
AAW43659  118 GIITALIAFLIIRAEMAFFDLKEGFCstswgtarrfccaprhqspgsdggedecsdwiewgqffnpkekdgpfggwvygg 197 Cryptococcus neofo...
CAA19579  105 GTTVGFAAYMLDIVTSWLSDIRRGYCtshwyynekfccwysetmgmfkhd-------lyndltfqgssctawkpwtykfs 177 fission yeast
BAE66438  100 GILTAGVAFAVDVSVETVADWKEGYCarsiwlnrraccsvaef----------------------dgscsqwtpwaqgfs 157 Aspergillus oryzae
Feature 1                                                                                     
P51792    151 mNYIMYIFWALSFAFLAVSLVk---------------------------------------------------------- 172 Norway rat
CAA21887  104 vSCLIYVSVSVGFAFIATTLGy---------------------------------------------------------- 125 fission yeast
AAO73005  167 fRWIAYVLFAAAFSFSAAYLVk---------------------------------------------------------- 188 Cryptococcus neofo...
XP_460866 142 fNYIIYVIISVLLAYSAAILVk---------------------------------------------------------- 163 Debaryomyces hanse...
XP_503716 173 lRYMMYTFICVICATSASVLVi---------------------------------------------------------- 194 Yarrowia lipolytic...
P37020    156 sPFIIFMLLSVLFALISTLLVk---------------------------------------------------------- 177 baker's yeast
XP_962366 187 iNYLIYILFAILFACTSATLVk---------------------------------------------------------- 208 Neurospora crassa ...
AAW43659  198 pEFMAYATVALLLAVTASCMTvylsssahhttskdstfltppskiptakqstassptkrtaslpygphnecqplldsvan 277 Cryptococcus neofo...
CAA19579  178 lNYLIYTAFALLFVLCAAIMVr---------------------------------------------------------- 199 fission yeast
BAE66438  158 sRYAIYVGFALLFGLISVSLTmttkasmpaansnnsi------------------------------------------- 194 Aspergillus oryzae
Feature 1                           #####                                        #####        
P51792    173 ---------------vFAPYACGSGIPEIKTILSGFii---rgYLGKWTLMIKTITLVLAVASGLSLGKEGPLVHVACCC 234 Norway rat
CAA21887  126 ---------------vVAPAARASGIPTIKAILSGYkypdmnvFFSIKTLCSKSLAVCFSVASGLWVGKEGPFVHIATNI 190 fission yeast
AAO73005  189 ---------------nFAPYAAGSGISEIKCILGGFii---ngFLSVETFFIKGLTLPLAIASGLAVGKEGPSVHVACSV 250 Cryptococcus neofo...
XP_460866 164 ---------------kYAPSAAGSGISEIKCIVSGFvm---kgFLGWWTLLIKSVGLPLAIASGLSVGKEGPSVHYAVCV 225 Debaryomyces hanse...
XP_503716 195 ---------------tYSPHSKLSGISEIKTILAGYii---kgFMGKWTLLIKSLGLGLAVGSGVWVGKEGPLVHVACCC 256 Yarrowia lipolytic...
P37020    178 ---------------yVAPMATGSGISEIKVWVSGFeyn--keFLGLLTLVIKSVALPLAISSGLSVGKEGPSVHYATCC 240 baker's yeast
XP_962366 209 ---------------sYAPYAAGSGISEIKCIIAGFvm---kgFLGFWTLVIKSLALPLAIGSGLSVGKEGPSVHYAVCT 270 Neurospora crassa ...
AAW43659  278 epptpliesppetfrkVMFYAAGSGIPEIKTILSGFvi---hgYLGGWTLLTKSAGLALSVGSGLSLGKEGPLVHMSSCV 354 Cryptococcus neofo...
CAA19579  200 ---------------dVAPLAAGSGISEIKCIISGFlr---dsFLSFRVMLVKCVGLPLAIASGLSVGKEGPSVHLATTI 261 fission yeast
BAE66438  195 -gqgqpqkgdkvatgkILYLASGSGIPEIKTILSGFei---phLLDLKVLVVKAVGAVFAVATGMCLGKEGPFVHISTCV 270 Aspergillus oryzae
Feature 1                                                                                     
P51792    235 GNIFSYLFPKYstNEAKKREVLSAASAAGVSVAFGAPIGGVLFSLEEVSY-------------YFPLKTLWRSFFAALVA 301 Norway rat
CAA21887  191 IYLVERIAPSLadSEIFTRQLLAAAMASGIAASFNAPVGGVIFALEQLASss---------fpSLFTGSIWYEFLCSASS 261 fission yeast
AAO73005  251 GNVVAKWFNRYerSHLKMREIVTASSAAGVAVAFGSPIGGVLFSIEEMNQ-------------TYSNRTMWRSFVCALVA 317 Cryptococcus neofo...
XP_460866 226 GNSIAKLFGKYrkSATKAREFLTATSAAGVAVAFGSPMGGVLFSIEDIST-------------VFQLSTIWKSYFCSLIA 292 Debaryomyces hanse...
XP_503716 257 ANLLIRYTSREh-NEAQKREILSAAAAAGISVAFGSPIGGVLFSLEQVSY-------------YFPDKTMWHSFVCAMIA 322 Yarrowia lipolytic...
P37020    241 GYLLTKWLLRDtlTYSTQYEYLTAASGAGVAVAFGAPIGGVLFGLEEIASa-----------nRFNSSTLWKSYYVALVA 309 baker's yeast
XP_962366 271 GNVISRLFAKYrrNASKTREILSACAAAGVAVAFGSPIGGVLFSLEEMSS-------------YFPLKTMWRSYFCALVA 337 Neurospora crassa ...
AAW43659  355 GNIVSRMFLKFecNEAKRREVLSAACAAGVAVAFGAPVGGVLFSLEEVSY-------------YFPPKVMWRSFWCAAIA 421 Cryptococcus neofo...
CAA19579  262 GHNISKIFKYAreGSIRYRDICVASAASGVAVAFGSPIGGVLFGIEVGKFieiltnsfkemsgGYDPKMIVYSFFCCLSA 341 fission yeast
BAE66438  271 GYLVGSLVPKYaaNERKMREMLAVACSAGLSVAFGAPIGGVLFSYEEIST-------------YFPRRVLWRSYLCSLVA 337 Aspergillus oryzae
Feature 1                                                                                     
P51792    302 AFVLRSINPFGNSRLVLFYVEYhtpWYLFELFPFILLGVFGGLWGAFFIRANIAWCRRRKstkf-gkyPVLEVIIVAAIT 380 Norway rat
CAA21887  262 VVALQLIRSWHTDVGYLSYVSLdrrWSYKDTLPFIFISILCGCLGSVLIYLNMKFASKTKgfs--kisNVFFVIFLSLIT 339 fission yeast
AAO73005  318 TFTLASMDPFRTGKLVIFNVSYdrdWHYFEIPAYVLIGIFGGLYGAFVIKFNVQMAAFRRkhl--sghGIFEAVALASIT 395 Cryptococcus neofo...
XP_460866 293 VTTLAALNPFRTGQLVMFEVTYntnWHYFEIPFYIILGIFGGVYGIVVSKFNLRVVAFRKkyl--snmAVREVIILSSLT 370 Debaryomyces hanse...
XP_503716 323 AVTLQFVNPFRTGKLVLFQVEYdrlWHRFELVPFAILGIFGGLYGAYFIKLNLKYAKMRKttfi-knfPILEVAILALIT 401 Yarrowia lipolytic...
P37020    310 ITTLKYIDPFRNGRVILFNVTYdrdWKVQEIPIFIALGIFGGLYGKYISKWNINFIHFRKmyl--sswPVQEVLFLATLT 387 baker's yeast
XP_962366 338 TAVLSAMNPFRTGQLVMFQVHYdrsWHFFEILFFILLGIFGGLYGAFVMKWNLRVQAFRKkyl--tnyAILEATLLAAAT 415 Neurospora crassa ...
AAW43659  422 AITLKALNPFGNGSLVLFAVTYtkeYHYWEYIIFVVLGVFGGLYGAVFARLNIIWSRHVRngtwlrrhPIFEVVLVVLLT 501 Cryptococcus neofo...
CAA19579  342 VGVLHMLNPFRTGQVVLFEVRYsgsWHFFELLFFCFLGIFGGLYGEFVMRLFFLIQKLRKkyl--srwGVLDAAFVTVIT 419 fission yeast
BAE66438  338 AAALKELDPAGTGQLVLFETNYgvdYDVTHYVIFIFLGICGGVFGGVFCQANFAWSKSFRqlrlikrsPVLEVFLVVLLT 417 Aspergillus oryzae
Feature 1                                                                                     
P51792    381 AVIAFPNpytrlntselikELFTDCgplessslcdyrndmnaskivddipdrpagvgvysaIWQLCLALIFKIIMTVFTF 460 Norway rat
CAA21887  340 SLTAYAIlge-------seLLFNPMelfpqvinscsps----------sstvlcettfwvtAIVLFTSALLGLLLTSATF 402 fission yeast
AAO73005  396 AIIGYLNgflridmtemlsVLFRECegggdyngl------------------cqassqwrmVNSLLLATIIRTVFIIVSY 457 Cryptococcus neofo...
XP_460866 371 ACFCYFNeflrldmtetmqILFNECdagsehaic------------------npnskkvsiFMSLIFATVARMVLTIFTY 432 Debaryomyces hanse...
XP_503716 402 GLINYPNvymrlqpsvllsYLFQECnastpealc-------------------nldnwsqsVALLLSACGLGFLLASYSF 462 Yarrowia lipolytic...
P37020    388 ALISYFNeflkldmtesmgILFHECvkndntstfshrlc--------qldenthafeflkiFTSLCFATVIRALLVVVSY 459 baker's yeast
XP_962366 416 AIVCYPNsflridmtesmeILFLECegaedyqgl------------------cerdhrfrnVVSLLLATVIRIFFVIISY 477 Neurospora crassa ...
AAW43659  502 TIVSFSNpytrmggtefvaSLFEECnsssssslcv-----------------nhphelatvIWEVFMALIIKGCLTIITF 564 Cryptococcus neofo...
CAA19579  420 SLVSFLNpwlrldmtlgmeLLFQECksssspelin----------------lcdpslrtknTILLLIATFARTIFVTFSY 483 fission yeast
BAE66438  418 ALLQYPNqmirdtgdivmqRLLVDCnvvsenwicq----------------qealdekggyYAWLISGTFIKLILTTITF 481 Aspergillus oryzae
Feature 1           #####                                                                     
P51792    461 GiKVPSGLFIPSMAIGAIAGRIVGIAveqlayyhhdwfifkewcevgadCITPGLYAMVGAAACLGGVTRMTVSLVVIVF 540 Norway rat
CAA21887  403 GaAIPTGIIVPSLAIGACIGRAVGTLlksr----------------fpsLAGTSIYGVIGSIAFLSSTTRLVVALVVILF 466 fission yeast
AAO73005  458 GcKVPAGIFVPSMAVGATFGRMIGILvkamynsypsa-pwfaacapdapCITPGTYAFLGAAAAMGGITRLTVTVVVIMF 536 Cryptococcus neofo...
XP_460866 433 GcKVPAGIFVPSMATGATFGRALGMIvekiqqsnkessifstcpangdkCIIPGTYAFLGAAAALSGITHLTVTVVIIMF 512 Debaryomyces hanse...
XP_503716 463 GvALPAGIIIPSMCIGALFGRAVGILmatwhetnrdf-flfascpaegtCVTPGVYAVVGAASALGGVTRLTISIVVITF 541 Yarrowia lipolytic...
P37020    460 GaRVPAGIFVPSMAVGATFGRAVSLLverfi--------------sgpsVIIPGAYAFLGAAATLSGITNLTLTVVVIMF 525 baker's yeast
XP_962366 478 GcKVPAGIFVPSMAIGASFGRSVGIIvqalheanpqs-pffaaclpdvpCITPGTYAFLGAAAALSGIMHITVSVVVIMF 556 Neurospora crassa ...
AAW43659  565 GiKVPAGIFIPSLAVGACFGRIVGHMmeyieftypel--sifnvckdtdCIVPGVYAMVGAAATLAGVTRTTVSLAVIMF 642 Cryptococcus neofo...
CAA19579  484 GaKVPAGIFVPSMAVGASFGYMIGLIaemiyqrfpns-vlflachgsesCITPGTYALLGAAASLSGIMHLTVTIVVIMF 562 fission yeast
BAE66438  482 GcKVPSGIIIPALDGGALFGRMVGQLi---------------------pDISPGIFAMVGSAAFLAGVSRMTVSLAVIMF 540 Aspergillus oryzae
Feature 1                                    #                     
P51792    541 ELTGGLEYIVPLMAAVMTSKWVGDAFGREGIYEahi---------rlNGYPFL 584 Norway rat
CAA21887  467 ELTGALNIALPLMLATLISKWVSDSIIETSIYDawiqfrnipyfpssNSLKFS 519 fission yeast
AAO73005  537 ELTGALTYILPTMIVLLVTKAVSDQFGGGGISDhmi---------kfNGYPFL 580 Cryptococcus neoformans var. grubii
XP_460866 513 ELTGALRYIIPTMIVVAITKSINDKYGKGGIAEqmi---------kfNGLPLI 556 Debaryomyces hansenii CBS767
XP_503716 542 ELTGALNYVLPIMAGVMVSKWVGDAIGGKRGIYesw--------ihvLNLPYL 586 Yarrowia lipolytica CLIB122
P37020    526 ELTGAFMYIIPLMIVVAITRIILSTSGISGGIAdqm--------imvNGFPYL 570 baker's yeast
XP_962366 557 ELTGALTYILPTMIVVGVTKAVSELFGKGGIADrmi---------wfSGFPFL 600 Neurospora crassa N150
AAW43659  643 ELTSTLNYVVPVMLSILIAKTVADGLEKKGIYDlvi---------dlNQLPYL 686 Cryptococcus neoformans var. neoformans JEC21
CAA19579  563 ELTGALNFILPTVLVVALANSIGNMLGKTGIADrsi---------eiNGLPLL 606 fission yeast
BAE66438  541 ELTGEVKFIPPFMIAILTAKWVADRICADGVYDlaq---------hlQGHPFL 584 Aspergillus oryzae

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