Conserved Protein Domain Family
MM_CoA_mutase_1

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cd03678: MM_CoA_mutase_1 
Coenzyme B12-dependent-methylmalonyl coenzyme A (CoA) mutase (MCM) family, unknown subfamily 1; composed of uncharacterized bacterial proteins containing a C-terminal MCM domain. MCM catalyzes the isomerization of methylmalonyl-CoA to succinyl-CoA. The reaction proceeds via radical intermediates beginning with a substrate-induced homolytic cleavage of the Co-C bond of coenzyme B12 to produce cob(II)alamin and the deoxyadenosyl radical. MCM plays an important role in the conversion of propionyl-CoA to succinyl-CoA during the degradation of propionate for the Krebs cycle. In some bacteria, MCM is involved in the reverse metabolic reaction, the rearrangement of succinyl-CoA to methylmalonyl-CoA. Members of this subfamily also contain an N-terminal coenzyme B12 binding domain followed by a domain similar to the E. coli ArgK membrane ATPase.
Statistics
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PSSM-Id: 239650
Aligned: 6 rows
Threshold Bit Score: 1017.45
Created: 18-May-2006
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putative activeputativeputative
Feature 1:putative active site [active site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                      
AAZ59635   512 LLAMWPQMQQAYSGDDYVVKIRDKELRTRLVTTTLSGTKVRKVVLPRFEDEGEILTWLMRENVPGSFPYTAGVFAFKREN 591  Ralstonia eutrop...
AAZ56844   498 QLANWPNVVASYSGDEQVIKVRDREIRTRLHRESLAGTKIPRVALPRYTDHGELVSFLRRENLPGFFPFTAGVFPFKRDD 577  Thermobifida fus...
ABA58359   516 HLRHWPETRRRLTNEYYTYSVRGQEIQGENYYKSLSHLRIPKVALPRCQDWGEILRFLLEENVPGEYPFTAGLYPYRRTT 595  Nitrosococcus oc...
BAB07515   505 ILDQWEAKKTAYSGDTFVMNIRGKEIETELTTESLAGLKIPKVVLPKFADWGEILRWSMLENVPGSFPFTAGVFPFKRKG 584  Bacillus halodur...
EAR14869   531 LLLGWQALKQRYREPEYRFKVRGRELTMETHTESLSHLKIPKVALPAYRAWGDVLQWQLRENVPGRYPYTAGLYPFKRKG 610  Robiginitalea bi...
NP_713136  500 ILSSWEEKLKNYQGENFTYKVRDKEIKVSNTTVSLSNLKIPKVAVPKFKDWGEIVRWSFQENFPGEFPFTSGVFPFKRTG 579  Leptospira inter...
Feature 1        # # #                         #  # #  #                 #                     
AAZ59635   592 EDPTRMFAGEGDAFRTNRRFKLVSEGMEAKRLSTAFDSVTLYGEDPHVRPDIYGKVGNSGVSIATLDDMKVLYDGFDLTS 671  Ralstonia eutrop...
AAZ56844   578 EEPARMFAGEGDPFRTNRRFKLLSEGQPATRLSTAFDSVTLYGRDPDPRPDIYGKIGTSGVSVATLDDMKELYAGFDLAA 657  Thermobifida fus...
ABA58359   596 EELARMFAGEGTPERTNRRFHYLVRGQPSIRLSTAFDPIVLYGEDPAPQPDVFGRIGMSGVSVASLDDFKKLFSGFDLCQ 675  Nitrosococcus oc...
BAB07515   585 EDPKRQFAGEGTPERTNRRFHYLSKDDEAKRLSTAFDSVTLYGEDPDYRPDIYGKVGESGVSICTLDDMKKLYAGFDLCA 664  Bacillus halodur...
EAR14869   611 EDPTRMFAGEGGPERTNRRFHYVSLDMPAKRLSTAFDSVTLYGNDPGHRPDIYGKIGNAGVSVCCLDDAKKLYSGFDLSD 690  Robiginitalea bi...
NP_713136  580 EDPTRMFAGEGGPERTNARFHYVSLGMPAQRLSTAFDSVTLYGEDPGERPDIYGKIGNSGVSIATLDDAKKLYSGFDLCN 659  Leptospira inter...
Feature 1           # #                                                                        
AAZ59635   672 PNTSVSMTINGPAPTILAMFMNTAIDQNLDKFRADNGreptd-------------------------------------- 713  Ralstonia eutrop...
AAZ56844   658 PTTSVSMTINGPAPTVLAFFLNTVIDQQLDAFRDKHGrdpde-------------------------------------- 699  Thermobifida fus...
ABA58359   676 PNVSVSMTINGPAPMLLAWFFHTAIDQQVEKCLRRQGkwkaaqqrikvfyrdqprpryggdlp--sghdglglgllgvsg 753  Nitrosococcus oc...
BAB07515   665 PSTSVSMTINGPAPIILAMFLNTAIDQQVEAFQRENDrvpse-------------------------------------- 706  Bacillus halodur...
EAR14869   691 PMTSVSMTINGPAPMLLAFFLNAAIDQNCEKYIAENGlekeveariaayfkekgvdrpeyrgelpegndglglrllgltg 770  Robiginitalea bi...
NP_713136  660 PTTSVSMTINGPAPMVLAFFMNTAIDQACEKHILASGieksvrqkiesiykekkfpipkyntqipegndglglmllgvtg 739  Leptospira inter...
Feature 1                            #          ##                                     #  #    
AAZ59635   714 ------deeakIRAWVLQNVRGTVQADILKEDQGQNTCIFSTEFSLKVMGDIAEYFVHHQVRNFYSVSISGYHIAEAGAN 787  Ralstonia eutrop...
AAZ56844   700 ------qeaaeIRANALRSVRGTVQADILKEDQGQNTCLFSTEFSLRMMADIQEWFIANQVRNFYSVSISGYHIAEAGAN 773  Thermobifida fus...
ABA58359   754 eqllprehyeqIRADVLRHIRGTVQADILKEEQAQNECIFTTEFGLRLMGDIQEYFIAHQIRHYYSVSVSGYHIAEAGAN 833  Nitrosococcus oc...
BAB07515   707 ------eeladIKARTLATVRGTVQADILKEDQGQNTCIFSTEFALRMMGDIQQYFIDHHVRNYYSVSISGYHIAEAGAN 780  Bacillus halodur...
EAR14869   771 advlpddvysrIRSETLRSVRGTVQADILKEDQAQNTCIFSTEFALRLMGDVQEYFIENEVRNFYSVSISGYHIAEAGAN 850  Robiginitalea bi...
NP_713136  740 devlekevyekIKQETLKLVRGTVQADILKEDQAQNTCIFSTEFALKMMGDIQEFFIKNQVRNFYSVSISGYHIAEAGAN 819  Leptospira inter...
Feature 1                                     # # #                                     # # #  
AAZ59635   788 PISQLAFTLANGFTYVEAYLARGMHIDDFAPNLSFFFSNGMDPEYSVLGRVARRIWAVTMRDKYGANERSQKLKYHIQTS 867  Ralstonia eutrop...
AAZ56844   774 PITQLAFTLANGFTYVEAYLARGMHIDDFAPNLSFFFSNGMDPEYSVLGRVARRIWAIAMRDKYGANERSQKLKYHVQTS 853  Thermobifida fus...
ABA58359   834 PITQLAFTLANGFTLVEYYLSRGMAIDDFAPQMSFFFSNALDPEYAVIGRVARRIWARAMRERYGASPRSQMLKYHIQTS 913  Nitrosococcus oc...
BAB07515   781 PISQLAFTLANGFTYVEYYLSRGMDINDFAPNLSFFFSNGLDPEYTVIGRVARRIWSTVMKHKYGANERSQKLKYHIQTS 860  Bacillus halodur...
EAR14869   851 PITQLAFTLANGFTYVEYYLSRGMDIDRFGPNLSFFFSNGIDPEYAVIGRVARRIWARAMKEKYGAGPRAQMLKYHIQTS 930  Robiginitalea bi...
NP_713136  820 PITQVAFTLANGLTYVEYFLSRGMKIDDFAPNLSFFFSNGIDPEYAVIGRVARRIWAKAMKYKYGANDRSAMLKYHIQTS 899  Leptospira inter...
Feature 1      ##                          #        #  ##                                      
AAZ59635   868 GRSLHAQEIDFNDIRTTLQALIAIYDNCNSLHTNAYDEAITTPTGESVRRALAIQLIINREWGVAKCENPNQGSFLIEEL 947  Ralstonia eutrop...
AAZ56844   854 GRSLHAQEMQFNDIRTALQALIAIYDNANSLHTNAYDEAITTPTEESVRRALAIQLIINREWGLAMNENPLQGSFIIDEL 933  Thermobifida fus...
ABA58359   914 GRSLQAQEINFNDIRTTLEALYAIYDNCNSLHTNAYDEAVTTPTEESVRRALAIQLIINRELGLNYNQNVLQGSFLIQEL 993  Nitrosococcus oc...
BAB07515   861 GRSLHAQEIDFNDIRTTLQALMAIYDHCNSLHTNAYDEAITTPTEQSVRRAMAIQMIITKELGLAKNENSLQGSFIIEEL 940  Bacillus halodur...
EAR14869   931 GRSLHAQEIDFNDIRTTLQALYAIYDNCNSLHTNAYDEAITTPTEESVRRAMAIQLIINKELGLAKNENPLQGSFIIEEL 1010 Robiginitalea bi...
NP_713136  900 GRSLHAQEIAFNDIRTTLQALYAIYDNCNSLHTNAYDEAITTPTEESVRRAMAIQLIINRELGLSKNENPSQGSFIIEEL 979  Leptospira inter...
Feature 1                                                                           
AAZ59635   948 TDLVEEAVLQEFERIAERGGVLGAMETGYQRGKIQEESLYYEQLKHDGTLPIIGVNTFRNPAGDPIPQK 1016 Ralstonia eutropha JMP134
AAZ56844   934 TDLVEEAVLAEFDRITERGGVLGAMETGYQRGRIQDESMLYEQRKHDGSLPIIGVNTFRNPNGDDGAAQ 1002 Thermobifida fusca YX
ABA58359   994 TRLVEEAVYQELNRLSERGGVLGAMETNYQRNKIQEESLYYESRKHDGNLPIVGVNIFPSLRPEKTLLS 1062 Nitrosococcus oceani ATCC 1...
BAB07515   941 TELVEEAVLAELEQINDRGGVLGAMETQYQRSKIQEESMHYEMKKHSGELPIIGVNTYMNPNEQDEEAF 1009 Bacillus halodurans C-125
EAR14869  1011 TDLVEEAVLAEFDRITERGGVLGAMETMYQRSRIQEESLHYETLKHSGEYPIIGVNTFLSSKGSPTILP 1079 Robiginitalea biformata HTC...
NP_713136  980 TDLVEQAILEEFHKISERGGVLGAMEMMYQRNKIQEESLYYESLKHNGEFPVIGVNTFLSKEGSPTIVP 1048 Leptospira interrogans sero...

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