Conserved Protein Domain Family
Link_domain_CSPGs_modules_1_3

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cd03517: Link_domain_CSPGs_modules_1_3 
Link_domain_CSPGs_modules_1_3; this extracellular link domain is found in the first and third link modules of the chondroitin sulfate proteoglycan core protein (CSPG) aggrecan. In addition, it is found in the first link module of three other CSPGs: versican, neurocan, and brevican. The link domain is a hyaluronan (HA)-binding domain. CSPGs are characterized by an N-terminal globular domain (G1 domain) containing two contiguous link modules (modules 1 and 2). Both link modules of the G1 domain of aggrecan are involved in interaction with HA. In addition, aggrecan contains a second globular domain (G2) which contains link modules 3 and 4. G2 appears to lack HA-binding activity. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Statistics
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PSSM-Id: 239594
Aligned: 10 rows
Threshold Bit Score: 139.08
Created: 6-Mar-2006
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putative
Feature 1:putative hyaluronan binding site [chemical binding site]
Evidence:
  • Comment:HA-binding residues were identified in TSG-6 and CD44 by site-directed mutagenesis.
  • Comment:These two HA-binding residues are found at equivalent sequence positions in TSG-6 and CD44 . None of the other HA-binding residues identified were found at equivalent sequence positions in the two proteins.
  • Citation:PMID 9417085

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                  ##                                                                  
NP_004377  160 VVFHYRSar--dRYALTFAEAQEACRLS-----------------------SAIIAAPRHLQAAFEd---------GFDN 205  human
AAK40085   157 VVFLYREgt--aRYAYTFSMAQEACNRI-----------------------KATIATPEQLLAAYHs---------GYEQ 202  African clawed frog
CAG10796   121 VVFHYRDas--gRYEFTFPQAQGACWAI-----------------------GAQIASPEQLLAAFYd---------GYEQ 166  Tetraodon nigrov...
P16112     153 IVFHYRAis--tRYTLDFDRAQRACLQN-----------------------SAIIATPEQLQAAYEd---------GFHQ 198  human
NP_990071  160 VVFHYRPag--aRYALTFAAARRACMDN-----------------------SAVIASPQHLQAAFEd---------GYDN 205  chicken
NP_999853  151 VVFHYRAnt--sRYSLNFTQAQQACADV-----------------------DSSIATPEQLYSAYEd---------GFEQ 196  zebrafish
CAG04559   128 VVFHHRDaa--qRYAFTFQRARAACQAI-----------------------GAQMASPQQLLAAYHs---------GYQP 173  Tetraodon nigrov...
CAG07718    68 VVFHYQPpg--aRYALSFTDAQRACREV-----------------------SAHMAAPAQLWAAYYd---------GFAS 113  Tetraodon nigrov...
CAG07891   120 VVFHYRTnt--sRYNLNYQEAVQTCQDI-----------------------GATIATFDQLKSAYEd---------GFDQ 165  Tetraodon nigrov...
AAG01897    57 CHVHYLRpppsrRAVLGSPRVKWTFLSRgreaevlvargvrvkvneayrfrVALPAYPASLTDVSLalselrpndsGIYR 136  human
Feature 1                                                              
NP_004377  206 CDAGWLs-------DRTVRYPItQSRPGCYGDRSSLPGVRSYGRRNPQELYDVYCF 254  human
AAK40085   203 CDAGWIs-------DQTVRYPIqIPRDGCYGDMDGFPGVRNYGVLDPDDMYDVYCY 251  African clawed frog
CAG10796   167 CDAGWLa-------DQSVRYRH-LPRHGCYGDMDGQPGVRNYGTMNPDEIFDVYCY 214  Tetraodon nigroviridis
P16112     199 CDAGWLa-------DQTVRYPIhTPREGCYGDKDEFPGVRTYGIRDTNETYDVYCF 247  human
NP_990071  206 CDAGWLa-------DQSVRYPItLSRPGCYGDRNSLPGVRSYGQREPGELYDVYCY 254  chicken
NP_999853  197 CDAGWMa-------DQTVRYPIiRPRDGCHGDKWMKPGVKSYDVRNAYEKYDVYCY 245  zebrafish
CAG04559   174 CDAGWLs-------DGSVSDPIqTPGEACSPGMGGFPGARNYGPVEPDELYDVHCY 222  Tetraodon nigroviridis
CAG07718   114 CAAGWLd-------DQTVRYSVqSPELGCYGHKEYLAGVRNYGKKDPKELFDVYCF 162  Tetraodon nigroviridis
CAG07891   166 CDAGWLa-------EQIVGYPItKPRNGCYGNLQNKPGIRTYGKRKLTDTYDVYCY 214  Tetraodon nigroviridis
AAG01897   137 CEVQHGiddssdavESSQRYPIqTPREACYGDMDGFPGVRNYGVVDPDDLYDVYCY 192  human

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