Conserved Protein Domain Family
SQR_TypeB_2_TM

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cd03498: SQR_TypeB_2_TM 
Succinate:quinone oxidoreductase (SQR)-like Type B subfamily 2, transmembrane subunit; composed of proteins with similarity to the SQRs of Geobacter metallireducens and Corynebacterium glutamicum. SQR catalyzes the oxidation of succinate to fumarate coupled to the reduction of quinone to quinol. C. glutamicum SQR reduces low potential quinones such as menaquinone. SQR is also called succinate dehydrogenase (Sdh) or Complex II and is part of the citric acid cycle and the aerobic respiratory chain. SQR is composed of a flavoprotein catalytic subunit, an iron-sulfur protein and one or two hydrophobic transmembrane subunits. Members of this subfamily are classified as Type B as they contain one transmembrane subunit and two heme groups. The heme and quinone binding sites reside in the transmembrane subunit. The transmembrane subunit of members of this subfamily is also called Sdh cytochrome b558 subunit based on the Bacillus subtilis protein. The structural arrangement allows efficient electron transfer between the catalytic subunit, through iron-sulfur centers, and the transmembrane subunit containing the electron acceptor (quinone). The reversible reduction of quinone is an essential feature of respiration, allowing transfer of electrons between respiratory complexes. Proteins in this subfamily from G. metallireducens and G. sulfurreducens are bifunctional enzymes with SQR and QFR activities.
Statistics
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PSSM-Id: 239578
Aligned: 33 rows
Threshold Bit Score: 128.526
Created: 9-Feb-2006
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
Feature 1:proximal heme binding site [chemical binding site]
Evidence:
  • Comment:Based on the proximal heme binding site of Wolinella succinogenes fumarate reductase transmembrane subunit.
  • Comment:Wolinella succinogenes fumarate reductase contain two heme groups, one proximal and the other distal to the [3Fe-4S] cluster of the iron-sulfur subunit. Two histidines coordinate with iron in each heme. The proximal heme is also referred to as the high-potential heme.
  • Comment:A member of this subfamily, Corynebacterium glutamicum SQR, has been reported to contain two heme molecules.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1           ##  #  #                                                  ##  #             
ABB32622     10 RKVLMAITGQFLVLFIIVHLLGNSSIF---IPGGINAYAEHLHalPPLVWGFRLVILCVAIIHIFFGVQLSLen-rAANP 85  Geobacter metall...
BAD79389      7 LKLAAALSGLVLILFVGFHLTTNLLLWr--GAEALDRAAIALHn-QVWLPAAEAIVLTAIAVHFLTVLILAWrnrqARGP 83  Synechococcus el...
CAE77706     11 KKYLMGITGLVWAGFVLAHMAGNLLIFv--SNDAYNAYGHALTs-GNIIYVAEAVLVLALIVHVFCALSLTKnn-rEAKQ 86  Bdellovibrio bac...
ZP_01062129  10 RKVAMALSGLFLVLFLGQHFTINLTSTf--SPETFNEFSHFMGtnFLVQAILQPVLIFGVVFHFVMGFILEArn-rSARK 86  Flavobacterium s...
ZP_00311041  15 RKVIMALTGLFLCTFLAVHLAGNFQLLhndGGEAFNLYTKFMTs-NPLIKAISYVNFAFIFGHVVWGAYLTIqn-kKARP 92  Cytophaga hutchi...
ZP_01053241  11 KKVSMALSAFFLMVFLLQHLSINMMSVf--SADLFNEVSHFMGtnPVVQFALQPILIFGVVFHFIMGFILEIqn-rNARN 87  Tenacibaculum sp...
ABB35826      7 VRIGSALSGLMLVLFLVVHLAGLLPALi--APVHFEQYATALHh-QPWLPVLEAGLAATAAMHLSFTVAKTLrn-rGAGN 82  Synechococcus sp...
CAE07107     29 VRLGAAFSGLLLVLFVLVHLIGLLPAVl--APEQFEAYATALHs-SPWLPVVESGLLLMAVVHISLTLVKAMan-rRAGN 104 Synechococcus sp...
CAE20306     11 FRAWSAATGLLLVLFLMLHLGGVVMAPf--APASFEIYAAALHq-SAWLPFAEFAFLAAAFIHLALSLAKLIvn-rRTGN 86  Prochlorococcus ...
ABB25554      7 IRNANALSGLLLVLFLVVHLGGLTSVLg--APASFEAYASGLHh-NLWLRPLELGLGLTSFLHISLSLQKALrn-rQAGN 82  Synechococcus sp...
Feature 1                        #      #                                                       
ABB32622     86 DTYAVKNLk---eATLSSTSMLYTGLLLLAFILYHLLQFTVRATpdikvgv---------dalgrvdVFGMVTNSFSHGI 153 Geobacter metall...
BAD79389     84 QAYAQWQSkqtswLRWAANSTVISGSGLAVFLLVHLQGMRWREHdp-------------------sqTSSLILQTLQQPA 144 Synechococcus el...
CAE77706     87 QRYAVAAGgk-kkVTLASRTMAVQGSLILVFIILHLITFKYGTHyettvn-----------gvvmrdLAKLMFEVFQSPA 154 Bdellovibrio bac...
ZP_01062129  87 VSYVSYKGna--nSSWVSRNMIYTGIVVLAFLGLHFYDFWFPEIaykyiea---------npsdatrYYGELVEKFHSPV 155 Flavobacterium s...
ZP_00311041  93 VGYAYNDPgk--tSSFSSRWMGVLGTMILIFLIIHLKDFKLAYMglthdlpmvtytlengddvtvknMYAEVVEEFHEPA 170 Cytophaga hutchi...
ZP_01053241  88 VSYAQNNGsa--nSSWMSRNMIWSGAAILAFIILHFIDFWFPEIntkfiqgdw-----sglhngefrYYHELQEKFVNPI 160 Tenacibaculum sp...
ABB35826     83 TAALLSRRgr-plDALASRSKVAAGVITLGFLLLHLQQLRWPRPsd-------------------glEREVLQQVLQQPI 142 Synechococcus sp...
CAE07107    105 TATLRSRRqs-plAALASRSTVVAGLVTLGFLVMHLRQLRWPRPaa-------------------gdEAATLIQVLQQPW 164 Synechococcus sp...
CAE20306     87 RAALVSRRgd-rlAVLAARSQAIGGLILLGFLVVHLLQLRWPRPaa-------------------geELIALRALLAQPA 146 Prochlorococcus ...
ABB25554     83 TADLVSRRge-plAAWASRSKTIAGVITLGFIGLHLQQLRFPRPld-------------------ghEREALVHVLQQPF 142 Synechococcus sp...
Feature 1                     #   #   #  #                                      
ABB32622    154 IAVLYIAAMVVLFLHLSHGIQSFFQTMGwnnHKSRPVFSTIGKVAAVVFLLGYASIPFVIVTGI 217 Geobacter metallireducens GS-15
BAD79389    145 IALLYGLGAAVLALHLSHGLRSMARSLGlfyPQWAIAGQRVAIAIAIGLGIGFISIIALANRTL 208 Synechococcus elongatus PCC 6301
CAE77706    155 YIAWYVVCLVLLGFHLSHGVGSTFQSLGlmeGTYRNTWKKLSYGYAVVVAAGFIAQPVYIFLVG 218 Bdellovibrio bacteriovorus HD100
ZP_01062129 156 RTGLYVLSFVFLALHLYHGFASSFQSVGf-nNKYARGLKKFAKVYAIAIPAGFIFIALFHHFNH 218 Flavobacterium sp. MED217
ZP_00311041 171 VVAIYVLSMIALGFHLYHGFQSAFQTLGlrhPKYTPAIKAVGFVFWGLIPLGFAIIPIIFLFCR 234 Cytophaga hutchinsonii
ZP_01053241 161 RVAGYCIAFVFLGLHLAHGFTSAFQSVGa--ASLRKKLGVLGKVYAIIVPLGFIIIALYHHLNH 222 Tenacibaculum sp. MED152
ABB35826    143 NLMVYTAVSLAIGLHLLHGAEAGHRNLGlltPANGPSIRWGGRLLASGIGGGFLLISLGLALGG 206 Synechococcus sp. CC9605
CAE07107    165 NAVLYAAAAVALALHLLHGAEAAHRSLGwltPANSSALRAGAGVLAALIGGGFLMISVLLALRG 228 Synechococcus sp. WH 8102
CAE20306    147 NVALYLLAAVAVSLHVFHGGEAAHRSLGlldPVNGFRIRRVFRMLALLLGGGFSVVALLVSASA 210 Prochlorococcus marinus str. MIT...
ABB25554    143 SLAMYCLGALAIGLHLVHGAEAAHRSLGwldPSNKSSIRFGGRMLAALVSGGFLLISLGLALDV 206 Synechococcus sp. CC9902

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