Conserved Protein Domain Family
SQR_TypeC_SdhD_like

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cd03495: SQR_TypeC_SdhD_like 
Succinate:quinone oxidoreductase (SQR) Type C subfamily, Succinate dehydrogenase D (SdhD) subunit-like; composed of predominantly uncharacterized bacterial proteins with similarity to the E. coli SdhD subunit. One characterized protein is the respiratory Complex II SdhD subunit of the only eukaryotic member, Reclinomonas americana. SQR catalyzes the oxidation of succinate to fumarate coupled to the reduction of quinone to quinol. It is also called succinate dehydrogenase or Complex II, and is part of the citric acid cycle and the aerobic respiratory chain. SQR is composed of a flavoprotein catalytic subunit, an iron-sulfur protein and one or two hydrophobic transmembrane subunits. E. coli SQR is classified as Type C SQRs because it contains two transmembrane subunits and one heme group. The SdhD and SdhC subunits are membrane anchor subunits containing heme and quinone binding sites. The two-electron oxidation of succinate in the flavoprotein active site is coupled to the two-electron reduction of quinone in the membrane anchor subunits via electron transport through FAD and three iron-sulfur centers. The reversible reduction of quinone is an essential feature of respiration, allowing transfer of electrons between respiratory complexes.
Statistics
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PSSM-Id: 239575
Aligned: 41 rows
Threshold Bit Score: 73.3989
Created: 10-Feb-2006
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
Feature 1:putative proximal heme binding site [chemical binding site]
Evidence:
  • Comment:Based on proximal heme binding site of Escherichia coli Succinate dehydrogenase.
  • Comment:Members of this subfamily contain one heme group, proximal to the [3Fe-4S] cluster of the iron-sulfur subunit. Two histidines from different membrane anchor subunits coordinate with iron in heme.
  • Comment:Heme is essential for functional assembly and structural stability of the membrane anchor subunits.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                #                                                    #   #             
AAU92190     22 HDWWRQRVTAVALVPLGLWFAFSVal---lPSASHAELVAWINVPw--NTLLLLSFILIAFYHTMLGLQVVIEDYVHlDW 96  Methylococcus ca...
ZP_00153230  23 HHWLLQRVTGIILALCSVWLIYFTlt---nKNNDINIIMWALKKPf--NVVALLITVVISLYHAMLGMRVVIEDYIScHK 97  Rickettsia ricke...
EAN46373     21 HHWLQQRLTALGNILLVSFLFVSLlr---lPLADHGAVLRWASNPs--VALALILMVISVFWHLRLGLQVMIEDYIHgEA 95  Sphingopyxis ala...
NP_044797    16 MHWWLQRFLAILLAPIILYLLFDVai--yiGQQSDPTVMMFLNRIfnhNSIFIFITSVILIWHVRGGMEVIIEDYVHgEK 93  Reclinomonas ame...
ZP_01016831   7 KHYIAQRFTALIQIPLVIWLVFGVig---hAGDTQDQFRVWLSEPl--TASLMIIFILSVFFHMHLGMGEVVDDYIHkPS 81  Parvularcula ber...
ZP_00373111   9 HHWWVQRVSAVILLFLFPWFIYSFsct-fyTDSSLSFSEKFINHPl--ELLFFVVLLFCIFWHAVLGMQVVCEDYIHsVP 85  Wolbachia endosy...
AAS89250      7 LHWWMQRMTAVVMLPVPIFLVKAL------LVSDFATGLLDLTHGy--KGALTALFLMPAFYHGVLGVQVVLEDYVRsDA 78  agent of human g...
CAI26684      6 YHWLSQRLTAFIMLPFSVWFFYKFlrflsiVCKSVSELDLSFVELntiDVIASVCFFIIAFYHAILGLQVILEDYVQsSV 85  Ehrlichia rumina...
YP_153642    14 YFWWMQRIAGLVMLPVPFLFAFFY------RSYGFESVHAADYGFc--ASVSAIALLVAAFYHGVLGVQVVLEDYVHsEV 85  Anaplasma margin...
ZP_00544947   7 YHWLIQRVTAFVLIPLSLWFLFKVlgvisiILKSFPELHLSISNIsntDLIILLCFFISAFYHAVLGVQVILEDYIHsVV 86  Ehrlichia chaffe...
Feature 1                                
AAU92190     97 LKLVGILGVKLVVSFLTLAAVYAIL 121 Methylococcus capsulatus str. Bath
ZP_00153230  98 LRNTLIIIVQLFCIVTIVAFVVALF 122 Rickettsia rickettsii
EAN46373     96 TRLFALVLLNFYAIGGAAYGIFAIV 120 Sphingopyxis alaskensis RB2256
NP_044797    94 TRIVSIFLIRVIAIEIMEYLYKCSI 118 Reclinomonas americana
ZP_01016831  82 SRSLLNRVNQLVALVLAVLAVFAVA 106 Parvularcula bermudensis HTCC2503
ZP_00373111  86 LRIFTITCIKYLSSITYITLAFTIF 110 Wolbachia endosymbiont of Drosophila ananassae
AAS89250     79 LRAFLITFIKLFAVLTVCVFSLVVL 103 agent of human granulocytic ehrlichiosis
CAI26684     86 LRVSILLLIKGIVTVTLLFLIFAIF 110 Ehrlichia ruminantium str. Welgevonden
YP_153642    86 LRAFMITFFRLFALVTVCAVTLAML 110 Anaplasma marginale str. St. Maries
ZP_00544947  87 LRASVFLVIKGIVILTVLFLTFIIL 111 Ehrlichia chaffeensis str. Sapulpa

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