Conserved Protein Domain Family
MutL_Trans_MLH3

?
cd03486: MutL_Trans_MLH3 
MutL_Trans_MLH3: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to yeast and human MLH3 (MutL homologue 3). MLH3 belongs to the DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. MLH1 forms heterodimers with MLH3. The MLH1-MLH3 complex plays a role in meiosis. A role for hMLH1-hMLH3 in DNA mismatch repair (MMR) has not been established. It has been suggested that hMLH3 may be a low risk gene for colorectal cancer; however there is little evidence to support it having a role in classical HNPCC.
Statistics
?
PSSM-Id: 239568
Aligned: 12 rows
Threshold Bit Score: 145.537
Created: 21-Feb-2006
Updated: 2-Oct-2020
Structure
?
Aligned Rows:
 
ATP binding
Feature 1:ATP binding site [chemical binding site]
Evidence:
  • Comment:By similarity to Escherichia coli MutL.
  • Comment:conserved Lys residue from the transducer domain interacts with the gamma-phosphate of bound nucleotide.

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                      
CAG10616   205 SIYHRFVQIHSlsr-aqNLGEINfth---------qqfSVVGYVGReg---hyNNCLQFLYVNERLLLk-TRVHKLINCL 270  Tetraodon nigrov...
AAH73356   136 DVRSRFCQIYGlpr-sqKLCEIQhkv---------kefDMWGYISCea---hyNKRMQYLYVNKRLVLk-TKLHQLIDFL 201  African clawed frog
XP_638890  249 SFLSYFKHFYGqem-mnKLEYVTsenynnttnnnsssyYLSGYLSSphkkghpNKSFQYIYLNNRIVLn-TKLHRHVNQL 326  Dictyostelium di...
AAX59030   206 DVCSRFCQIYGlgk-sqKLREISfky---------kefELSGYISSea---hyNKNMQFLFVNKRLVLr-TKLHKLIDFL 271  human
XP_780519   82 SIVQTFGYLFGkdv-adCLKEVNhir---------tifNVSGFIGSts---frNKSLQFVYVNGRLVLk-TKIHKLINEL 147  purple urchin
XP_421275  285 DVYSRFCQIYGlgr-sqKLREIKhks---------ggfEISGYISSeg---hyNKNMQFLYVNRRLVLk-TRLHKLIDFL 350  chicken
EAL21089   218 SALDVFKTLYGgal-vqSVQKIKvta---------gkrKVDGFISIsg---dvSKAHQHLYINNYPIDr-GDVHTAIAKK 283  Cryptococcus neo...
CAG88001   241 RYATIFKSIYGhsl-lsEYETVRanf---------qdyKLDGIIGLfp---sqSKAFQYIFVNQRPLLisNEDSKYLNKI 307  Debaryomyces han...
CAG62407   240 PIHNAFIRVYGhvvpdpSIKIVKlsf---------reyNITGLISNcq---vrSKSFQFVFVNGRRYSn-SEFLGKINRI 306  Candida glabrata...
NP_015161  233 QMSQVLRNVFGaiippdMLKKVSlkf---------neyQIEGIISKmp---vgLKDLQFIYINGRRYAd-SAFQGYVDSL 299  baker's yeast
AAS50273   226 TLMAVLMCCLGpvvaakDLQYVSaky---------qdiEVQGVISTvg---vpSKDYQFIYINKRRYEd-KRFIFGFNKL 292  Ashbya gossypii ...
XP_452646  216 QLDTCFHNIFGeilprkQLKFVSasf---------kshTVKGIVSInp---iqSKDYQYIFINGRKYSd-SRFFSAVNKL 282  Kluyveromyces la...
Feature 1                                                                                   #  
CAG10616   271 LRkp-----------sSINQKndspersvgs--------------pkhkrsqdlHGVYILNIKCCYSEYDVCL-EPAKTL 324  Tetraodon nigrov...
AAH73356   202 LRk------------eSSICKpkninvgksss------------pgrsrscqelHGIFVINIYCHYSEYDVCF-EPAKTL 256  African clawed frog
XP_638890  327 YQkyrlf-----natrKANANvskiak---------------------kevidsNPIFILFLRCSQLEYERSYePSSKTF 380  Dictyostelium di...
AAX59030   272 LRk------------eSIICKpkngptsrqmn-----------sslrhrstpelYGIYVINVQCQFCEYDVCM-EPAKTL 327  human
XP_780519  148 LSn-------------SLVTKskgknqdtalgytmksnaasstcqpspggnqveYGIFVLNITCPRSEYDITL-DPSKTL 213  purple urchin
XP_421275  351 LRk------------eSVICKaksvpaskqgss----------spgrlrcgpelYGIFVLNVTCAYSDYDVSL-EPTKTL 407  chicken
EAL21089   284 FAs-------------SKFANlasagqhdededy-------hpsgrrsprrlerYPVYVLNVTLSAGELDVSY-EPQKGV 342  Cryptococcus neo...
CAG88001   308 FVtanfg-----gmltSTASNislspskvspn------------kqytsksfsrFPVFIINIQCPIIIEDLFQ-DPSKSI 369  Debaryomyces han...
CAG62407   307 FDq-------------STFATnavekdtr-----------------lgkrsarsYPLFVIKIDGPAHVQDLIQ-STSKDI 355  Candida glabrata...
NP_015161  300 FQaqdfgekgmsllktKSVGKpy-----------------------------rsHPVFILDVRCPQTIDDLLQ-DPAKKI 349  baker's yeast
AAS50273   293 FR--------------SARYKednmlaast---------------rggqqaysgYPVYLLVCKGPPSISDLLQ-NPSKVI 342  Ashbya gossypii ...
XP_452646  283 FQs------------tKYVEKnwdsysvk-----------------svgspysaYPLFIIGCEVPLEISDLIQ-DPGKTI 332  Kluyveromyces la...
Feature 1                            
CAG10616   325 IEFkdWDGVMACVEEAVKTFLK 346  Tetraodon nigroviridis
AAH73356   257 IEFkdWDTVLHCVEEGTRAFLK 278  African clawed frog
XP_638890  381 LEFndWKKPLAEIQNVLTKFLT 402  Dictyostelium discoideum AX4
AAX59030   328 IEFqnWDTLLFCIQEGVKMFLK 349  human
XP_780519  214 IEFrdWEGAVTCVHELVTSFLH 235  purple urchin
XP_421275  408 IEFqnWDVLLACVEEGVKMFLK 429  chicken
EAL21089   343 LGYkdIESLKTMLLAVVDEFLR 364  Cryptococcus neoformans var. neoformans B-3501A
CAG88001   370 YYSnhMKLILNMLRNVFSSFLL 391  Debaryomyces hansenii CBS767
CAG62407   356 IHLsdGKLINILILKVIYSFLK 377  Candida glabrata CBS138
NP_015161  350 VKPshIRTIEPLIVKTIRSFLT 371  baker's yeast
AAS50273   343 ENLeyGRVLQPLLCQVAKSFLR 364  Ashbya gossypii ATCC 10895
XP_452646  333 FQSgtLKTLCPLILNVMSSFLK 354  Kluyveromyces lactis NRRL Y-1140

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap