1ULI,1WQL


Conserved Protein Domain Family
Rieske_RO_Alpha_BPDO_like

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cd03472: Rieske_RO_Alpha_BPDO_like 
Click on image for an interactive view with Cn3D
Rieske non-heme iron oxygenase (RO) family, Biphenyl dioxygenase (BPDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of BPDO and similar proteins including cumene dioxygenase (CumDO), nitrobenzene dioxygenase (NBDO), alkylbenzene dioxygenase (AkbDO) and dibenzofuran 4,4a-dioxygenase (DFDO). ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. BPDO degrades biphenyls and polychlorinated biphenyls (PCB's) while CumDO degrades cumene (isopropylbenzene), an aromatic hydrocarbon that is intermediate in size between ethylbenzene and biphenyl. NBDO catalyzes the initial reaction in nitrobenzene degradation, oxidizing the aromatic rings of mono- and dinitrotoluenes to form catechol and nitrite. NBDO belongs to the naphthalene subfamily of ROs. AkbDO is involved in alkylbenzene catabolism, converting o-xylene to 2,3- and 3,4-dimethylphenol and ethylbenzene to cis-dihydrodiol. DFDO is involved in dibenzofuran degradation.
Statistics
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PSSM-Id: 239554
Aligned: 7 rows
Threshold Bit Score: 263.627
Created: 20-Mar-2006
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 8 residues -Click on image for an interactive view with Cn3D
Feature 1:iron-sulfur cluster [ion binding site]
Evidence:
  • Structure:1ULI_A; The rieske domain of the BPDO oxygenase alpha subunit binds [2Fe-2S]

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                       # ##                # ## # #  
1ULI_A     48 LERIFGRSWLLMGHETQIPKAGDFMTNYMGEDPVMVVRQKNGEIRVFLNQCRHRGMRICRADGGNAKSFTCSYHGWAYDT 127 Rhodococcus sp.
1WQL_A     51 LERVFARSWLLLGHEGHIPKAGDYLTTYMGEDPVIVVRQKDRSIKVFLNQCRHRGMRIERSDFGNAKSFTCTYHGWAYDT 130 Pseudomonas fluore...
AAC46390   46 LERVFGRSWLLLGHETQIKKPGDYTTNYMGEDPVLVVRQKDGSIAVFLNQCRHRGMRICRSDAGNAKAFTCSYHGWAYDT 125 Burkholderia sp. PS12
BAC98956   44 LERIFARSWVCMGHETQIPKAGDYQAAYIGEDPVVVVRQKDNSIRVFLNQCRHRGMRICRVDGGNAKAFTCPYHGWAYDT 123 Xanthobacter polya...
Q52438     51 LERIFARSWLLLGHEAHIPKTGDYLTTYMGEDPVIMVRQKDGSIKVFLNQCRHRGMRICRSDAGNAKAFTCTYHGWAYDI 130 Pseudomonas sp. KK...
AAC03436   51 LERVFARSWLLLGHEGHIPKAGDYLTTYMGEDPVIVVRQKDRSIKVFLNQCRHRGMRLERSDFGNAKSFTCTYHGWAYDT 130 Pseudomonas putida
AAC44161   42 LERVFARSWILLGHESHVPNTGDFLNTYIGEDPVILVRQKDASLRVFLNQCHHRGMKLSRDDAGNAKAFVCTYHGWAHDI 121 Cycloclasticus oli...
Feature 1                                                           
1ULI_A    128 GGNLVSVPFEEQAFp-------gLRKEDWGPLQARVETYKGLIFANWDADAPDL 174 Rhodococcus sp.
1WQL_A    131 AGNLVNVPYEKEAFcdkkegdcgFDKADWGPLQARVDTYKGLIFANWDTEAPDL 184 Pseudomonas fluorescens
AAC46390  126 AGNLVNVPFEAESFp-------cLDKKEWSPLKARVATYKGLIFANWDHDAPDL 172 Burkholderia sp. PS12
BAC98956  124 AGNLVSVPMEQEAFgg------kLNKAEWGPKQARVETYKGLIFANWDESAPNL 171 Xanthobacter polyaromaticivorans
Q52438    131 AGNLVNVPYEKEAFcdkkegdcgFDKADWGPLQARVETYKGLIFANWDAEAPDL 184 Pseudomonas sp. KKS102
AAC03436  131 AGNLVNVPYEKEAFcdkkegdcgFDKADWGPLQARVDTYKGLIFANWDAEAPDL 184 Pseudomonas putida
AAC44161  122 SGQLIDIPFEKEGHce------pLDKSKWSPLQARVETYRGLIFANWDEQAPSL 169 Cycloclasticus oligotrophus

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