2D2C,1Q90


Conserved Protein Domain Family
Rieske_cytochrome_b6f

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cd03471: Rieske_cytochrome_b6f 
Click on image for an interactive view with Cn3D
Iron-sulfur protein (ISP) component of the b6f complex family, Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. The cytochrome b6f complex from Mastigocladus laminosus, a thermophilic cyanobacterium, contains four large subunits, including cytochrome f, cytochrome b6, the Rieske ISP, and subunit IV; as well as four small hydrophobic subunits, PetG, PetL, PetM, and PetN. Rieske ISP, one of the large subunits of the cytochrome bc-type complexes, is involved in respiratory and photosynthetic electron transfer. The core of the chloroplast b6f complex is similar to the analogous respiratory cytochrome bc(1) complex, but the domain arrangement outside the core and the complement of prosthetic groups are strikingly different.
Statistics
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PSSM-Id: 239553
Aligned: 17 rows
Threshold Bit Score: 221.855
Created: 18-Feb-2006
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
[2Fe-2S]cytochrome b
Conserved site includes 7 residues -Click on image for an interactive view with Cn3D
Feature 1:[2Fe-2S] cluster binding site [ion binding site]
Evidence:
  • Structure:2D2C_Q; Rieske domain of the iron-sulfur protein of Mastigocladus laminosus Cytochrome B6f Complex binds [2Fe-2S] cluster; contacts at 3.5A
  • Comment:The Rieske [2Fe-2S] cluster is liganded to two histidine and two cysteine residues present in conserved sequences called Rieske motifs.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                            # ## #            #  # # 
2D2C_Q     54 TTAKDKLGNNVKVSKFLESHnagDRVLVQGLKGDPTYIVVESKe-aIRDYGINAVCTHLGCVVPWNAAENKFKCPCHGSQ 132 Mastigocladus lami...
1Q90_C      1 QAAKDALGNDIKAGEWLKTHlagDRSLSQGLKGDPTYLIVTADs-tIEKYGLNAVCTHLGCVVPWVAAENKFKCPCHGSQ 79  Chlamydomonas rein...
NP_849295  84 TPAKDALGNDVVAAEWLKTHgpgDRTLTQGLKGDPTYLVVENDk-tLATYGINAVCTHLGCVVPWNKAENKFLCPCHGSQ 162 thale cress
CAH04961  115 QAAKDAAGNDIKVEKWLETXkpgDRSLAQGLKGDATYLIVKEDg-tLEKYGLNAVCTHLGCVVPWNQSEGKFMCPCHGSQ 193 Cyanophora paradoxa
CAC39606   54 ILAQDKIGHPIPASQILAQAs-gTRALIAGLAGEPTYLTVREDg-tLDPMGIVNNCTHLGCTFPWNPVDQQFQCPCHGSR 131 Nostoc sp. PCC 7120
AAP79170  126 VGALDALGNPVSAESWFKSHkknARDLVQGIKGDPTYLIVNDDgstLNSYGLNAICTHLGCVVPWDAASNKFKCPCHGSQ 205 Bigelowiella natans
AAM88439   97 VAAKDKLGNDILVEDWLKTHgpnDRTLAQGLKGDPTYLVVESDk-tLATYGINAVCTHLGCVVPWNAAENKFLCPCHGSQ 175 bread wheat
AAW79305   94 ITARDALGNDVIASKWISANpypGRALVEGLKGDAHYLIVKEDk-tLENYAINAVCTHLGCVVPWNRAQLKYICPCHGSQ 172 Isochrysis galbana
Q7V654     53 TSAKDELGNSVTASGWLANHsdgDRSLVQGLKGDPTYLIVEGDd-aIGSYGINAICTHLGCVVPWNSGVNKFVCPCHGSQ 131 Prochlorococcus ma...
EAQ69367   59 VLARNAQGEPIALTGWLADHdvgDRSLVQGLKGDPTYLIVTGEd-aIGRYGLNAICTHLGCVVPWDSGANQFICPCHGSR 137 Synechococcus sp. ...
Feature 1                                                     
2D2C_Q    133 YDETGRVIRGPAPLSLALCHATVQd-dNIVLTPWTETDFRTGEKPWWV 179 Mastigocladus laminosus
1Q90_C     80 YNAEGKVVRGPAPLSLALAHCDVAesgLVTFSTWTETDFRTGLEPWWA 127 Chlamydomonas reinhardtii
NP_849295 163 YNAQGRVVRGPAPLSLALAHADIDeagKVLFVPWVETDFRTGDAPWWS 210 thale cress
CAH04961  194 YDRTGKVVRGPAPLSLALAHVNVLedgVVAFEPWTETDFRTNTAPWWK 241 Cyanophora paradoxa
CAC39606  132 YDAQGSVERGPANRPLKLVQVQVKd-dYIWISPWQETDPRTGEKPWWV 178 Nostoc sp. PCC 7120
AAP79170  206 YAPDGHVVRGPAPRPLQLAHVEDDn-gKILLSPWTETDFRTGEKPWWA 252 Bigelowiella natans
AAM88439  176 YNNQGKVVRGPAPLSLALVHADVDd-gKVVFVPWVETDFRTGDNPWWK 222 bread wheat
AAW79305  173 YAATGQVVRGPAPLSLALAHLDEVd-gKVVLSPWKETDFRTGLVPWWK 219 Isochrysis galbana
Q7V654    132 YNSTGKVVRGPAPLSLALANIAVEn-dNVFVSQWTETDFRTGEKPWWT 178 Prochlorococcus marinus str. MIT 9313
EAQ69367  138 YDDTGKVVRGPAPLSLALNHVQVDd-dQVRLMPWTETDFRDGSAPWWI 184 Synechococcus sp. RS9917

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