1DCJ


Conserved Protein Domain Family
SirA

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cd03423: SirA 
Click on image for an interactive view with Cn3D
SirA (also known as UvrY, and YhhP) belongs to a family of two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is thought to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Statistics
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PSSM-Id: 239515
Aligned: 9 rows
Threshold Bit Score: 120.541
Created: 23-Jan-2006
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
CPxP motif
Conserved site includes 8 residues -Click on image for an interactive view with Cn3D
Feature 1:CPxP motif
Evidence:
  • Comment:These conserved residues serve to stabilize the first helix and are possibly involved in mRNA binding.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1       ##  #  #### #                                                            
1DCJ_A      11 TLDALGLRCPEPVMMVRKTvrnmqpGETLLIIADDPATTRDIPGFCTFMEHELVAKETDgl-----pYRYLIRK 79  Escherichia coli
Q9I3F3       8 ILDATGLNCPEPVMMLHNKvrdlapGGLLKVIATDPSTRRDIPKFCVFLGHELVEQQEEag-----tYLYWIRK 76  Pseudomonas aeruginosa
ZP_00066774 13 HLDTKGLTCPEPVMLLHTAvrdadvGDVIRVEATDPSTQRDIPKFCQFLGHPLLASAHEde-----lYIYYIRK 81  Microbulbifer degradans...
Q8K9B6       7 ILNLIGLRCPEPIMVIRKTlrkmkkNEKILVLADDPSTKRDIPYFCYFMEHQLLDRFIHvk-----pYRYLLKK 75  Buchnera aphidicola (Sc...
NP_778004    7 VLDLRKLRCPEPIMLLRKKireiknGTTLLILSDDPSTIREIPQYCKFMHHKLLKINTKdt-----iYKFWIQK 75  Buchnera aphidicola str...
XP_306429    3 KLDAIGLRCPEPVMMVRKKvrlmadGETLLVSADDPSTTRDIPSFCRFMDHTLVASETEqa-----pYRYLIRK 71  Anopheles gambiae str. ...
CAG67360    13 QLNTRGLRCPEPVMMLHQAirksksGDIVEVFATDPSTSWDIPKFCTHLGHELLLQEEHldanelkeYHYLIQK 86  Acinetobacter sp. ADP1
ZP_00473579 14 ELDTSGLYCPEPIMMMHNQvrdmtaGQILTVIATDPATTRDVPKFCTFLGHELIAQSHDde-----rYRYVIRL 82  Chromohalobacter salexi...
ZP_00654863 13 HLDTQGLICPEPVMMLHKTirkaagGDVIEILATDPATTRDIPNFCRHLGHTLVHQETLnda---ptYRYLVKK 83  Psychrobacter cryohalol...

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