1JE3


Conserved Protein Domain Family
YedF

?
cd03422: YedF 
Click on image for an interactive view with Cn3D
YedF is a bacterial SirA-like protein of unknown function. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Statistics
?
PSSM-Id: 239514
Aligned: 8 rows
Threshold Bit Score: 126.387
Created: 23-Jan-2006
Updated: 2-Oct-2020
Structure
?
Program:
Drawing:
Aligned Rows:
 
CPxP motif
Conserved site includes 8 residues -Click on image for an interactive view with Cn3D
Feature 1:CPxP motif
Evidence:
  • Comment:These conserved residues serve to stabilize the first helix and are possibly involved in mRNA binding.

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1       ##  #  #### #                                                       
1JE3_A      29 RLDMVGEPCPYPAVATLEAmpqlkkGEILEVVSDCPQSINNIPLDARNHGYtvLDIQQDGPtIRYLIQK 97  Escherichia coli
NP_252322   10 SLDLRGEHCPYNAIATLETlatmqpGERLEVVTDCSQSVHGIPEDTQRQGYkcLAVEQHGAlFRFLIEV 78  Pseudomonas aeruginosa PAO1
NP_282638    6 SLNLQGEACPYPAIATLDVlpklksGEILEVLCDCPQSINSIPQDAKNRGFkvLEIDQSGPtLRFLIQK 74  Campylobacter jejuni subsp. ...
ZP_00101510  9 RLDMVGEPCPYPAIATLEAmpslkkGEILEVVSDCPQSINNIPLDAKNHGYtvLDIQQDGPtIRYLIQK 77  Desulfitobacterium hafniense...
NP_842045   10 SLDLRGEHCPYNAIATLEAladmtaGQVLEVITDCAQSVNGIPEDARAKGYdcLAVEQHGPlFRFLIRV 78  Nitrosomonas europaea ATCC 1...
NP_860830   10 RLDLQGEPCPYPAVRTLEVlpelksGEILEVLSDCPQSINNIPIDAKNHGYevLGVEQLGAtIRYLIKK 78  Helicobacter hepaticus ATCC ...
ZP_00671077 11 RLDMIGEPCPYPAVATLEAmpqlrpGQILEVISDCPQSINNIPIDARNHGYevLEIQQDGPtIRYLIRR 79  Nitrosomonas eutropha C71
YP_393342   13 RLDMHGEPCPYPAIKTLEAlrsigdDDILEIISDCPQSINNIPIDVRNHGFkvLHIDTSTPsVRYFVKR 81  Thiomicrospira denitrificans...

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap