Conserved Protein Domain Family
SirA_like_N

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cd03421: SirA_like_N 
SirA_like_N, a protein of unknown function with an N-terminal SirA-like domain. The SirA, YedF, YeeD protein family is present in bacteria as well as archaea. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Statistics
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PSSM-Id: 239513
Aligned: 24 rows
Threshold Bit Score: 78.0134
Created: 20-Jan-2006
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
CPxP motif
Feature 1:CPxP motif
Evidence:
  • Comment:These conserved residues serve to stabilize the first helix and are possibly involved in mRNA binding.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1        ##  #  #### #                                                           
NP_816207     3 LVDALGKPCPIPVIETKKAla---elGLAGGTIEVLVDNEVAIENLKKLATKKQAtltAKQIEatvFSVKITV 72  Enterococcus faecalis V583
CAE10103      1 MIDVRNLGCPEPVIRTKKAld----aLGTEGILEVLGNTEASKENILRFAQNSGYgasLEERAggeFLITLTK 69  Wolinella succinogenes
ZP_00666526   5 TLDCRGMACPHPVLKAKEVv-----dRGDVARFSVIVDNPAAKENVSRFLARAGYavsVSEQGe-tFEITGNR 71  Syntrophobacter fumarox...
ZP_00130532  61 ELNCQNLPCPQPVLKCKDCi-----dTRSPAQMAVIVDNAAAKENVTRFLGTRGYavtATETPqgaWKLQAVL 128 Desulfovibrio desulfuri...
ZP_00676995   4 DLDCRGLECPAPVLRVRQFi-----eEENPAAIAVLVDNDAARQNVSRFLEHHSYrvsSEQQGg-rFRVVGTR 70  Pelobacter propionicus ...
ZP_00368841   2 KIDCRDLACPRPVIETKKAle----eLKENENLEILLNSQASKENVMRFLKSLNLkfsVKDLDd-eSVISIVK 69  Campylobacter lari RM2100
ZP_00663673   3 KVDVRGLSCPMPVIKTKKIl------DQGVKELLVIGTSSVSKENVSKLARSSGYqvtMKVDAkneWEMELRK 69  Syntrophomonas wolfei s...
YP_010888     5 TLNCQKLPCPQPVLRCKALl-----dTEAPARCTVTVDNAPASENVARFLTSRGYdtsVHADPeglWNIIAVR 72  Desulfovibrio vulgaris ...
NP_282642     2 KIDCRNLSCPQPIVETKNAle----kLQENEILEIVLNSIISKNNVVKFLNSLNLnpvVDENAq-eFCIKVQK 69  Campylobacter jejuni su...
AAP78333      6 QIDVRDLPCPEPVLKAKKAllginehTLKLHNYEIIGNSPSSKENLMRFLNTEGFefeVGFGRdeqFMIILKG 78  Helicobacter hepaticus ...

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