Conserved Protein Domain Family
SPFH_like_u1

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cd03408: SPFH_like_u1 
Uncharacterized family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily
This model summarizes an uncharacterized family of proteins similar to stomatin, prohibitin, flotillin, HflK/C (SPFH) and podocin. The conserved domain common to the SPFH superfamily has also been referred to as the Band 7 domain. Many superfamily members are associated with lipid rafts. Individual proteins of the SPFH superfamily may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic HflK/C plays a role in the decision between lysogenic and lytic cycle growth during lambda phage infection. Flotillins have been implicated in the progression of prion disease, in the pathogenesis of neurodegenerative diseases such as Parkinson's and Alzheimer's disease and, in cancer invasion and metastasis. Mutations in the podocin gene give rise to autosomal recessive steroid resistant nephritic syndrome.
Statistics
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PSSM-Id: 259806
Aligned: 155 rows
Threshold Bit Score: 102.248
Created: 11-Mar-2005
Updated: 2-Oct-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
CAB12440   21 MIFYKWNNREIKKGSRLIIRPGQDAVFLNNGRVEGVFQDDGDYDIESEIi----PFLSTLkgfkfgf-----------ns 85  Bacillus subtilis ...
ACY16649   25 FWVYKHPDQTVPMKAQLTVDSDETALFFRDGKYVGQFGPGRHTLDSQNI-----PFLGQLidkftgg-----------dv 88  Haliangium ochrace...
ABN06643   35 DNVIWRLPRNVMWNDNVLVREDEYGIFFRDGKALVVFDRPDRYALTTENi----PVLKSIlgtvvg-------------n 97  Methanocorpusculum...
ABF88706   25 DIIYKYPENNVRMLTQLTVDADEVALFVKDGKVEGKLGPGRHSLDTNNI-----PFLSRLiegftgg-----------nl 88  Myxococcus xanthus...
CAJ35630   26 GNIMWKVPRNIRFNDNIVVREDEMAVFYRDGKALDYIDRPDRYALTSMNa----PIVGRIveflsg-------------v 88  uncultured methano...
EFL43850   38 LVVHKFEYEDFPTGSYLIVGASQLAVFTNNLATGSSLDESAGKSQYSIFsgpckIKLETGdarfapfrnmshalsggass 117 Atopobium vaginae ...
CCF62177   18 QLVYKWPDVNIRSYSRAIVNADQTALFVKAGQVVATMGPGRHRIDADEL-----PVLGALvdtlsgg-----------nf 81  Nocardia cyriacige...
CAN93811   25 LIVYKHPDQNIPFWSQLTVDSDECALFFKDGRYMGYLPTGRHTLQTQNI-----PFLNNLvnkftgg-----------dv 88  Sorangium cellulos...
BAD84211   14 EIIWRYPNEVIKWGAQLVVHEYEVAVFMRDGKVYDVFGPGRHTLTTQNL-----PLLYKLvg------------------ 70  Thermococcus kodak...
NP_560881  14 EIIWRYPVDRIEWGAQLIVEEWQAAVFMRDGKVYDVFRAGRHTLTTLNL-----PLLTQVlsrv---------------- 72  Pyrobaculum aeroph...
CAB12440   86 gmraEVLFVNTKEFTVRWGTKQAINIPAAGMPgGMPIRANGTFNFKVQDYI---------SLIDKIAGVKDQYFv-EDIK 155 Bacillus subtilis ...
ACY16649   89 fiaeVFFVSAREHASIKFGTSVGDVVDPETRM-QVRMMVHGMFSARVHDPV---------RFVTGLVGQRVTTN--DAFI 156 Haliangium ochrace...
ABN06643   98 vqigEFYWAQKREFRDKFGTPQPLAFRDVDFG-VVQLRIFGQFSYKVVDPL---------LLITQFVGTKGLTKs-EEIV 166 Methanocorpusculum...
ABF88706   89 fiseIFFVSTREFAGVKFGGPIGDVRDPETGL-GIGTMVYGDFSIRVTDPE---------RLVVGLVGMGRTGN--DELL 156 Myxococcus xanthus...
CAJ35630   89 rqdaEVYYIQKRVFDGKFGSKQPYVFRDKDFG-LVNLRVFGEFRYKVTGPM---------NFINQFVGTFSYTTs-ADVE 157 uncultured methano...
EFL43850  118 fhstVYFINTTYMNELPWGTQKPIVMQDPEEEvNIHVRANGLFGVHIEQQDttiavpwarTFMQKVVGTRANYTq-AELL 196 Atopobium vaginae ...
CCF62177   82 yraeLYFVSTREFAGLKFGGRLADIADPASQQ-VVTLRVFGEFALAVRDPG---------QLIVGLAGTADLTDp-AALN 150 Nocardia cyriacige...
CAN93811   89 fiaeIFFVKTQPVRGVPFGGPLESMEDPVLYE-FVTPRIFGEFSLVVVDPV---------RFVVGYHGQCGGSGdnDVVL 158 Sorangium cellulos...
BAD84211   71 --gsNSPFKATVIFVSTKEFQGRYGGETQTRE-LAPIKYYGVYWFKVADPV---------QFLTEVVGGQSLYD--TSDV 136 Thermococcus kodak...
NP_560881  73 agyeKSPFVATVIYVSLKQHQLPFGGRGQTAE-LAPIQFFGTAWFRVADPA---------LFVTQVVGGQNIYT--TEDL 140 Pyrobaculum aeroph...
CAB12440  156 TRIISILDQLLMKWITREGKDMFNLQA------NAFDIAKGIQEDl---dMQLISDGMTVTGFQIMSFNYPQe-----VQ 221 Bacillus subtilis ...
ACY16649  157 GWFKSQVQKTIKENIAELIVAKKWPVAdvtsgaYTSEIEQETLTRv---hQHVDSYGVEIIRFGDFSISMDQ------KD 227 Haliangium ochrace...
ABN06643  167 EWLKSQIVMILNDTLGELKAKKQMGVLdm--paYLQEIEQLCLGKl---tTETEVYGLKIMKFAGLNINMPE------EV 235 Methanocorpusculum...
ABF88706  157 GWFKNQVLKVTRDRIAELLVKKRWPLLdvtsgaYTEEIETEVISGl---kPHVDGYGLTVVRMGNFHVSIKE------ED 227 Myxococcus xanthus...
CAJ35630  158 ERIKDQAVVVLYDVLGDAKNGGMGVADla---aNLTNIEQAWLERs---kAHFEPYGITMDKLSGLYITMPE------EV 225 uncultured methano...
EFL43850  197 NFMRAKIIEYAPDMISKKMLGEKIGILai--nsHLTEFSDELFTKl---kPYFADFGLVLDNFSCTSINAPDddldavNE 271 Atopobium vaginae ...
CCF62177  151 SWCADLLLKSMKIAVTQGVSRGDWPVLgl--saHLLPIETAVLRQt---nITLYEYGLRIVRMGNFDITLAP------ED 219 Nocardia cyriacige...
CAN93811  159 SWIKGKFFMSVKTVIGQVCAQQQKSLL------NLGGMSMELGARivqsaPNLEEIGCKILEIGNFNINFAA------ED 226 Sorangium cellulos...
BAD84211  137 TKFIRAYFNEGMMKHLSSYSIVDLFQN------LDMVSTQVKVKL-----MEDFRRLGLELVDVKIEGVNTTd-----EW 200 Thermococcus kodak...
NP_560881 141 QKFLRGYFNELLMAELSRQSIFTIYGN------LEQVSFIAKNAI-----QPHFGRIGLELIDVRFEGLDVTd-----PV 204 Pyrobaculum aeroph...
CAB12440  222 DMITKNASYGMVGDV 236 Bacillus subtilis subsp. subtilis str. 168
ACY16649  228 RERIARYRDRFAYAD 242 Haliangium ochraceum DSM 14365
ABN06643  236 QEAINKRGAMSALGV 250 Methanocorpusculum labreanum Z
ABF88706  228 EATLKKLGKDVAYSR 242 Myxococcus xanthus DK 1622
CAJ35630  226 QKAVDTRSSMGVLGT 240 uncultured methanogenic archaeon RC-I
EFL43850  272 MKIQRKRNELEAQGN 286 Atopobium vaginae PB189-T1-4
CCF62177  220 ADRLKRLAKDVTYIK 234 Nocardia cyriacigeorgica GUH-2
CAN93811  227 QKLLREANKARGEAR 241 Sorangium cellulosum 'So ce 56'
BAD84211  201 RQRLFWIMQTGNAQA 215 Thermococcus kodakaraensis KOD1
NP_560881 205 WRDRLFYIRATGVNP 219 Pyrobaculum aerophilum str. IM2
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