2PDA


Conserved Protein Domain Family
TPP_PFOR_PNO

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cd03377: TPP_PFOR_PNO 
Click on image for an interactive view with Cn3D
Thiamine pyrophosphate (TPP family), PFOR_PNO subfamily, TPP-binding module; composed of proteins similar to the single subunit pyruvate ferredoxin oxidoreductase (PFOR) of Desulfovibrio Africanus, present in bacteria and amitochondriate eukaryotes. This subfamily also includes proteins characterized as pyruvate NADP+ oxidoreductase (PNO). These enzymes are dependent on TPP and a divalent metal cation as cofactors. PFOR and PNO catalyze the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The PFOR from cyanobacterium Anabaena (NifJ) is required for the transfer of electrons from pyruvate to flavodoxin, which reduces nitrogenase. The facultative anaerobic mitochondrion of the photosynthetic protist Euglena gracilis oxidizes pyruvate with PNO.
Statistics
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PSSM-Id: 239472
Aligned: 27 rows
Threshold Bit Score: 562.611
Created: 13-Jan-2006
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
TPP-bindingdimer interface
Conserved site includes 13 residues -Click on image for an interactive view with Cn3D
Feature 1:TPP-binding site [chemical binding site]
Evidence:
  • Comment:TPP = thiamine pyrophosphate or thiamine diphosphate
  • Structure:2PDA; Desulfovibrio Africanus pyruvate:ferredoxin oxidoreductase binds TPP and divalent metal ion; contacts at 3.5A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                   #                      #                             ##            
2PDA_A     803 PLMEFSGACSGCGETPYVRVITQLFGERMFIANATGCSSIWGAsaPSMPYKTN-RLGQGPAWGNSLFEDAAEYGFGMNMS 881  Desulfovibrio af...
NP_815820  805 PLLEFSGACSGCGETPYVKLLTQMFGDRMLIANATGCSSIWGAaaGVTPYTTN-EQGQGPAWSNSLLEDNAEFGYGMLLA 883  Enterococcus fae...
NP_282614  811 PLFEFHGACPGCGETPYITLITRLFGERMIVANATGCSSIYGGsaPSTPYRKSvKNGHGPAWGNSLFEDNAEFGLGMKIA 890  Campylobacter je...
EAA39868   829 PLFEYHGACAGCGETAYITHVTRLFGSRLIIANATGCSSIYGFsfPFSPYTKN-AKGQGPAWANSLFEDNAEFGMGMLVG 907  Giardia lamblia ...
BAB81767   806 PLFEFSGACAGCGETPYAKLITQLFGDRMMIANATGCSSIWGGsaPSTPYTTN-HNGHGPAWANSLFEDNAEFGLGMFLG 884  Clostridium perf...
AAL95366   814 PLFEFHGACPGCGETPYIKLITQLYGDRMMVANATGCSSIYSGsaPATPYTTN-KNGEGPSWGSSLFEDNAEYGFGMHVG 892  Fusobacterium nu...
CAC96056   805 PLLEFSGACAGCGETPYVKLLTQMFGDRMMIANATGCSSIWGAsaPATPYTVN-DQGHGPAWGNSLLEDNAEYGYGMYLA 883  Listeria innocua
CAG75857   803 PLLEFSGACAGCGETPYAKLLTQLFGDRMLVANATGCSSIWGAsaPSIPYTTN-HKGQGPAWANSLFEDNAEFGLGMLLG 881  Erwinia carotovo...
AAC16733    15 PLLEFSGSCAGCAETSYARILTQLFGEQMYISNATGCSSIWGGpaATCPYTVNkDTNRGPAWANSLFEDNAEHGFGMYLG 94   Clostridium past...
AAA85494   792 PLIEFNGACQGCGETAICKLLTQLYGDQLYLANATGCSLVWGAtfPFNPFTTN-ERGHGPAWANSLFEDNAEFGYGMFKA 870  Trichomonas vagi...
Feature 1                                                                                      
2PDA_A     882 MFARRTHLADLAAKALEsd-aSGDVKEALQGWLAGKndp----ikSKEYGDKLKKLLagq--kdGLLGQIAAMSDLYt-- 952  Desulfovibrio af...
NP_815820  884 TQARRERLASKMTKAFSv--aSDSLRLLMEDWIAHLses----egTQQRAAKLRAALleektnqPLLEAIYDDQDLFv-- 955  Enterococcus fae...
NP_282614  891 TENTRHRIEHIMNESMQe--vPNALSALFKDWIANKdng----amSVEIKDKMIPILeqn-kniKAVQDILELKQYLs-- 961  Campylobacter je...
EAA39868   908 IQQRRERILETVKGLVAknlgGDKFIEAANSWIENYnki----aeSETAGDKLKEQIma---lsADCDELREAKDLLtlp 980  Giardia lamblia ...
BAB81767   885 VKAIRERLVDLAGKAIEag-vKPEAKEALEAWIAEVdng----egTRDRADAVVAALqge--tnEFAKEILKDQDYLa-- 955  Clostridium perf...
AAL95366   893 VEALRFRIQHTMEENMDk--vDEDIATLFKDWIANRqys----vrTREVRDILVPKLeal--gtDFAKEILDLKQYLv-- 962  Fusobacterium nu...
CAC96056   884 NQTMRKALNNKVTKALAnetiSEGLREALSDWQNQMdvs----edTRDRAEALQLALlnemkgnALLESIYRDRELFi-- 957  Listeria innocua
CAG75857   882 SRAIRDQLAKDVQAALAlp-lTPALNTAFSNWLELKdrg----egSRERADAVIDMLaeergkdPLLTHLYQNRDYLt-- 954  Erwinia carotovo...
AAC16733    95 QKTLRDQVIAKVEKLAAddkaSAEFKAAAAKFIETKestkentpaSEALVAELEKAAaa---gcELSKEVLEKKQYLp-- 169  Clostridium past...
AAA85494   871 VEARRNITKKLVVELLEsgeiKGELKELFEQLLKVWdqd----keSGDLAEKIKPLLakvqnpsEKMYALQSQADILs-- 944  Trichomonas vagi...
Feature 1                     ####                         # # ###                             
2PDA_A     953 -------KKSVWIFGGDGWAYDIGYGGLDHVLASGEDVNVFVMDTEVYSNTGGQSSKATPTGAVAKFAAAGKRTGKKDLA 1025 Desulfovibrio af...
NP_815820  956 -------KPSQWMIGGDGWAYDIGYGGIDHVLASGADVNMLVLDNEVYSNTGGQTSKATPASAIAKFAASGKYASKKDLG 1028 Enterococcus fae...
NP_282614  962 -------KKSHWIFGGDGWAYDIGYGGLDHVLASGENVNILVLDTEVYSNTGGQSSKSSRTGAVAQFAAAGKPIQKKDLG 1034 Campylobacter je...
EAA39868   981 snldllaRPLVLIQGGDGWSYDIGFAGLDHVLSTGLDVTILILDTEVYSNTGGQRSKATPLGAVARFAAAGKRTEKKDMG 1060 Giardia lamblia ...
BAB81767   956 -------KRSQWIFGGDGWAYDIGYGGVDHVLASGEDVNILVMDTEIYSNTGGQASKSTPTAAIAKFAAAGKRTKKKDLG 1028 Clostridium perf...
AAL95366   963 -------KKSQWIIGGDGWAYDIGYGGLDHVLASNEDINVLVMDTEVYSNTGGQASKATPTGSVAKFAAAGKPVKKKDLA 1035 Fusobacterium nu...
CAC96056   958 -------KRSQWMIGGDGWAYDIGFGGIDHVLASGEDVNIFVMDNEVYSNTGGQSSKATPTAAIAKFASGGKSVGKKDLG 1030 Listeria innocua
CAG75857   955 -------KPSQWVFGGDGWAYDIGYGGLDHVLASGEDINVLVFDTEVYSNTGGQSSKSTPVAAIAKFAAEGKRTRKKDLG 1027 Erwinia carotovo...
AAC16733   170 -------KKSVWVLGGDGWAYDIGFGGLDHVLATGENVNVMVFDTEMYSNTGGQASKASNIGEVCQFAAAGKDIGKKSLA 242  Clostridium past...
AAA85494   945 -------KKQVWIVGGDGWAYDIGYGGLDHVLASGENVKIIIYDTEVYSNTGGQCSKATSRGAVANFSAAGYTKAKKDLG 1017 Trichomonas vagi...
Feature 1                                                                                      
2PDA_A    1026 RMVMTYGYVYVATVSMGySKQQFLKVLKEAESFPGPSLVIAYATCINQGLrkGMGKSQDVMNTAVKSGYWPLFRYDPRLa 1105 Desulfovibrio af...
NP_815820 1029 MMAMTYENVYVAQIASGaNQMQTIKAFEEAEKFPGPSIIIAYTPCITHGLagGMSQTLKEAKDAVHSGYWSLYRYNPLLr 1108 Enterococcus fae...
NP_282614 1035 QIAMTYGYIFVAQVNSTaNYTHLIKAITAAEAYDGPSLVICYSPCIAHGIkgGLGYSGEQGELATKCGYWPLYTFDPRLe 1114 Campylobacter je...
EAA39868  1061 QIAMAYDNVYVGSISLGySHTAAIKTIREAFEWTGPSIVMAYAPCIEHGE--DMKASNATQKLAVETGYWLTYTRHPERg 1138 Giardia lamblia ...
BAB81767  1029 MMAMSYGYVYVAQIAMGaDKNQTLKAIAEAEAYKGPSLIIAYAPCISHGLkaGMGNSQLEEKRAVECGYWAMYRFNPMLk 1108 Clostridium perf...
AAL95366  1036 AIAMSYGHIYVAQVSMGaNQQQFIKAVKEAEAHQGPSIIIAYSPCINHGIkkGMSKSQTEMKLATECGYWPIFRYNPSLe 1115 Fusobacterium nu...
CAC96056  1031 IMAMSYGNIYVAQIAMGaSKRQTLKAIEEAEAYPGPSLIIAYTPCINHGIssGMKTMLSETQKAVECGYWSLYRYNPLLe 1110 Listeria innocua
CAG75857  1028 MMAMSYGNVYVAQIAMGaDKTQTLRAMAEAEAWPGPSLIIAYAACINHGLkaGMGCSQRETQRAVDAGYWHLYRFDPQRv 1107 Erwinia carotovo...
AAC16733   243 EIAMSYGYVYVAQIALGaNPAQTLKAISEAEAYNGPSLIIGYAPCELHGVkgGMNHCQDEMKSAVKSGYWNLFSFNPALk 322  Clostridium past...
AAA85494  1018 AIAMTYRNIYVASTCLLaDPNQALKALQEAKEYNGPAIIINYSPCINHGIkkGLGSTPKHCKDLLKTGYLNLFRYNPAKp 1097 Trichomonas vagi...
Feature 1                                                                     
2PDA_A    1106 aqgknpFQLDSKAPDg-SVEEFLMAQNRFAVLDRSFPEDAKRLRAQVAHELDVRFKELEHMAA 1167 Desulfovibrio africanus
NP_815820 1109 ekgkepMILDFKKPDfsLMKEFMRQQVRFASLESSQPDTAELLFNKTINDAKRRFYNYARLAG 1171 Enterococcus faecalis V583
NP_282614 1115 eqgknpLTLTGKEPDwdLYEQFLMNEVRYNSLKKANPEHAAELFERNKKDAQRRYRQLKRIAM 1177 Campylobacter jejuni subsp. jejun...
EAA39868  1139 ------LVMGCKEPSk-PVTDFLNRQNRFNQLLSERPAEAEVLRTELQDFVNSRYKKYSEMQA 1194 Giardia lamblia ATCC 50803
BAB81767  1109 etgknpFSLDSKEPTg-DFREFIMGEVRYAALAKAFPEAAEALFEKTERDAKERLENYKKLAA 1170 Clostridium perfringens str. 13
AAL95366  1116 kigknpLQIDSKEPKweKYEEYLTGEVRYQTLAKSNPEEAKNLFETNKKDAQKRWRQYKRMAA 1178 Fusobacterium nucleatum subsp. nu...
CAC96056  1111 ekgknpMVMDYKKVDfdQFEDFLKRETRYSALYKANPEVAAKLSEKTRLDAEKRFKRYATMAG 1173 Listeria innocua
CAG75857  1108 dkgknpFSLDSDEPEe-DFQDFLMGEVRYASLKRQHPAIANSLFEQTERDAKERYERYRRLAG 1169 Erwinia carotovora subsp. atrosep...
AAC16733   323 aegknpFTLTSKPGDg-TYQEFLNNETRYTRLKRAFPDRAEKLFSENEKAAMERYEHLLKLVE 384  Clostridium pasteurianum
AAA85494  1098 k----pLTVDTKQPDy-NLDPLVKGENRFAALKDIYPKEAETKFPQLINDMKTRYEGYKKIQQ 1155 Trichomonas vaginalis

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