Conserved Protein Domain Family
TPP_PFOR_porB_like

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cd03376: TPP_PFOR_porB_like 
Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.
Statistics
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PSSM-Id: 239471
Aligned: 30 rows
Threshold Bit Score: 323.036
Created: 13-Jan-2006
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
TPP-bindingputative dimer
Feature 1:TPP-binding site [chemical binding site]
Evidence:
  • Comment:TPP = thiamine pyrophosphate or thiamine diphosphate
  • Comment:Based on known TPP and divalent metal ion binding site of Desulfovibrio Africanus Pyruvate:ferredoxin Oxidoreductase.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                   #                         #                       ##                
AAC38207     18 FQGSHLLCPGCGHGIIVREVLNAVDg---PIVLGNSTGCLEVCSAv--YPHTSWDVPWIHIGFENGSTAISGVEAMYKAL 92  Helicobacter pylori
Q56317       19 ITQGHRLCPGCGAPITVKFVMMIARhlgyEPVVGLATGCLEVSTSi--YPYTAWSVPYIHNAFENVAATMSGVETAYKAL 96  Thermotoga maritima
NP_783048    14 ITSGHRMCAGCGAPMVVKWVMKAVKpe-nKVVVSNATGCLEVSTTl--YPYSAWKDSFIHTAFENAAATMSGVEAAYKNL 90  Clostridium teta...
ZP_00208002 148 FVPGLSGCQGCNSELIMRHAMRKIGr---NSVLATPPGCIPGMGSvgyNGKTGTKVPVFHPLLTNTASMLSGIRRYYDRI 224 Magnetospirillum...
CAD21693    155 FAPGLAGCQGCNTELLMRHTLRRVGp---DTVLATPPGCVPGMGSvgfNGTTGTKVPVFHPLLTNTAAMLAGIKRQYKRV 231 Azoarcus evansii
ZP_00576738   9 VAHGVSTCHGCGMELAVRNILDVLGp---RTIIVIPPGCAALFSGf--GSETALKIAGIQGNLENSAAIAAGIRAGLEMQ 83  Moorella thermoa...
ZP_00677560  14 MLPGNRACAGCGIGIGLRSITKALDg---KMVLVNPASCLTVLGGm--YPVSSMMIPWINVSFPSTAAAAAGVVAGLRAL 88  Pelobacter propi...
ZP_00867365  30 IWKCTSACAGCSSSLILRHVLKAAGp---DTVLVVPACCTSVLQGv--WPNTSFNIPVYNVAFAAAAAVASGMAAAFESM 104 Methanospirillum...
ZP_00663873  14 VLSGNGACGGCPATMALRIVGKALGs---NAIMLLTPSCSVASMGm--TPKLGYNWPCINITFASAGSSASGITHALEVM 88  Syntrophomonas w...
ZP_00667975   9 ILPGTRTCAGCGLPIAYRHMLKALGp---KMIMTHPACCLTILHGi--YPKTPVAINAVNNTFAGTAASASGLVAGLKAT 83  Syntrophobacter ...
Feature 1                         ####                         # # ###                          
AAC38207     93 tnkgr-yqgqKPKFVAFGGDGASYDIGLQFISGCMERGHDMTYICLDNENYANTGGQRSGSTPLGASTSTTPAGSvsfgk 171 Helicobacter pylori
Q56317       97 knkgkipedkKYAFIAFGGDGGTYDIGLQSLSGMLERGHKVLYVLYDNEGYMNTGNQRSGSTPPGSDTTTAPVGKklpgk 176 Thermotoga maritima
NP_783048    91 kgkg--kvkdNYKFIAFGGDGGTYDIGFQSLSGAMERGHDMLYVCYDNGAYMNTGIQRSSATPAGADTTTSPKGKqssgk 168 Clostridium teta...
ZP_00208002 225 gr-------kDIVVMALAGDGGTADCGFHAVSGAAERGEKVLYVCVDNEGYMNTGMQRSGTTPYGSWTSTTPVGEhmkgk 297 Magnetospirillum...
CAD21693    232 g--------rDVQALAIAGDGGASDVGFQSLSGRAERGEQMLFMVVDNEGYMNTGMQRSSCTPYGAWTSTTPVGEtsrgk 303 Azoarcus evansii
ZP_00576738  84 gk-------dDVTVLALAGDGATVDIGIQSLSGAMERGDRILYVCYDNEAYMNTGIQASGSTPMQAWTTTTPAKK----- 151 Moorella thermoa...
ZP_00677560  89 gr------adEMTVLAMVGDGGTGDIGIQALSGAAERNDDFIYVCYDNEAYMNTGTQRSGLTPHGARTTTTSRGK----- 157 Pelobacter propi...
ZP_00867365 105 g--------rTTNVIAYAGDGGTVDIGIQALSGALERGTNFLYICYDNEAYGNTGMQRSGSTPLGARTTTTPGGK----- 171 Methanospirillum...
ZP_00663873  89 qekgr-lqgeLPTVFAWVGDGGTYDIGFQALSGAAERNDNIIFFCYNNEAYSNTGVQRSGATPRGSFTTTTPTGK----- 162 Syntrophomonas w...
ZP_00667975  84 gr-------tDYTVVAMAGDGGTFDMGIQALSGAAERETDFIYVCYDNEAYMNTGVQRSSATPSGAVTTTTPVIPk---- 152 Syntrophobacter ...
Feature 1                                                                                       
AAC38207    172 KEKKKDIVNIMASHGVPYVAQLSPN-----KWKDMNKKIKTALD--TEGPCFINALSPCTTEWKFESNKTIELADMAVDS 244 Helicobacter pylori
Q56317      177 VQLKKNIVEIVAAHENVYAATASLS-----EPMDFFAKVEKALN--FDGPSFLAVFSPCVRFWRVNDDKTVEISKLAVET 249 Thermotoga maritima
NP_783048   169 TQFSKDLTMIMASHNIPYVAQTVPVipgtkYTLDLYNKSNRAINe-IKGAKFINVIAPCPRGWRCDTATELEAIKLAVET 247 Clostridium teta...
ZP_00208002 298 TQDAKNLPLIMTAHKCRYVATASTG-----YMEDLYEKLDRAIEasFEGFSYLHIYSPCPTGWRIPSNKVIDACRMSVDS 372 Magnetospirillum...
CAD21693    304 TQDAKNLPLIMVNHRCAYVATASTA-----YMEDLYDKLDKAIAasKNGFAYLHVYSPCTTAWRFPSNLNMEVARKAVET 378 Azoarcus evansii
ZP_00576738 152 HVYRKDMLQIARAHRIPYVASASIG-----YIEDLRKKIARARD--AGGPAYVHLQTPCPTGWGYDPARTIEVARLAVQT 224 Moorella thermoa...
ZP_00677560 158 KENPKDLPAIMEAHAVPYIASTSAA-----YPTDVYDKVVKARS--IKGLRYLHMNVPCPSGWGFDPRDTVKLGKLAVDT 230 Pelobacter propi...
ZP_00867365 172 THVKKDLDRIIAAHHLPYMATACSA-----YPQDLVKKVQKALS--IKGPKFMHILAPCPPGWRYDASQTIEVGKMAVKT 244 Methanospirillum...
ZP_00663873 163 RQPKKNMALLMLEHNIPYVATATVA-----YPGDLYDKVVKAKN--IPGMKYIEIQAPCYLGWQFDMPETVQMSRMAVRS 235 Syntrophomonas w...
ZP_00667975 153 EQAKKDFIQIMEAHDPAYLATMCSS-----YPADIYNKFLKAKA--IKGTRFIHMAVPCPTGWSFPTKDTVKIGRLAVES 225 Syntrophobacter ...
Feature 1                    
AAC38207    245 LMFPLFEIFNGRE 257 Helicobacter pylori
Q56317      250 KYWPLYEVERGVY 262 Thermotoga maritima
NP_783048   248 CYWPLYEVINGEF 260 Clostridium tetani E88
ZP_00208002 373 NFNPLWEYTNTTG 385 Magnetospirillum magnetotacticum MS-1
CAD21693    379 NFVMLWEYTPQDG 391 Azoarcus evansii
ZP_00576738 225 RCWPLYEIIEGRI 237 Moorella thermoacetica ATCC 39073
ZP_00677560 231 GLVVLYEIEDGVF 243 Pelobacter propionicus DSM 2379
ZP_00867365 245 GIWAMYEREYDSL 257 Methanospirillum hungatei JF-1
ZP_00663873 236 GAWLLWEAENGKI 248 Syntrophomonas wolfei str. Goettingen
ZP_00667975 226 AVVVLYEVENGAF 238 Syntrophobacter fumaroxidans MPOB

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