Conserved Protein Domain Family
TPP_OGFOR

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cd03375: TPP_OGFOR 
Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.
Statistics
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PSSM-Id: 239470
Aligned: 60 rows
Threshold Bit Score: 245.898
Created: 13-Jan-2006
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
TPP-binding
Feature 1:TPP-binding site [chemical binding site]
Evidence:
  • Comment:TPP = thiamine pyrophosphate or thiamine diphosphate
  • Comment:Based on known TPP and divalent metal ion binding sites of other family members.
  • Citation:PMID 9665697

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                           #                       ####
CAI07892     23 WCPGCGDYAVLAQIQklLPTLGIPRenFAFISGIGCSSRFPYYMDTYGMHSIHGRAPAIASGLKLARPELSVWVVTGDGD 102 Azoarcus sp. EbN1
YP_074052    18 YCPGCSHGVLHRIIAelLDELGLREr-TVGVASVGCSVLAYNYFETDFVQAPHGRAPAVATGVKRARPNLFVFTYQGDGD 96  Symbiobacterium ...
CAE26670     23 LCPGCGHGMALRALLwaIHELNIDRdkLAVVSGIGCAGRLSAYIDANTFHTTHGRPLAYATGLALARPDLHVVVITGDGD 102 Rhodopseudomonas...
AAC38212     18 WCWGCGDGVILKSIIrtIDALGWKMddVCLVSGIGCSGRMSSYVNCNTVHTTHGRAVAYATGIKMANPSKHVIVVSGDGD 97  Helicobacter pylori
NP_905909     3 YCPGCSHGVVHKLIAevIEEMGLTEe-TIGIAPVGCSVFAYRYIDIDWQEAAHGRAPALATAVKRLNPSKLVFTYQGDGD 81  Porphyromonas gi...
NP_988391    32 YCAGCGHGIIHKLMAksMDELEIQDr-CVLISPVGCAVFAYYYFDCGNIQVAHGRAPAVGTGVSRAEDNAIVMSYQGDGD 110 Methanococcus ma...
O26801       29 YCAGCGHGILHKLIGeaMDELGIQEr-AVMISPVGCAVFAYYYFDCGNVQVAHGRAPAVGTGISRAEDDAVVILYQGDGD 107 Methanothermobac...
ABB14499     19 YCPGCTHGIIHRILAevLDEMNLREk-AVAVIGVGCSCFAERYFNFDCIDVAHGRAPAVATGVKRANPNLVTITYQGDGD 97  Carboxydothermus...
ZP_00526851  35 YCPGCGHGIVHKLLAkaIDELGIQDr-TVLISPVGCSVFAYYYFDVGNVQVAHGRCPAAATAVKRSRPGSIVIGYQGDGD 113 Solibacter usita...
AAM06285     37 YCPGCGHGVLHKLIAeaIDDLGIQDr-TVMISPVGCAVFAYYYFDTGNIQVAHGRAPAVGTGVSRAEENAVVISYQGDGD 115 Methanosarcina a...
Feature 1                                # #                                                    
CAI07892    103 ALAIGGNHFIHAMRRNVDLKIILLNNRIYGLTKGQYSPTSEMGKKTKSTPlGSIDRPF-SPVALALGA----GATFVARS 177 Azoarcus sp. EbN1
YP_074052    97 MAAIGTAEIIHAAARGERITAIMYNNTIYGMTGGQMSPTTLMGAVTATTPyGRQEESG-RPYRMAELLaqmpGTAYAART 175 Symbiobacterium ...
CAE26670    103 CLAIGGNHLIHACRRNLKLTCLMLNNEIYGMTGGQVSPTTSETRLTTTTPyGNSEPNF-DACALATAA----GAGFVGRE 177 Rhodopseudomonas...
AAC38212     98 GFAIGGNHTMHACRRNIDLNFILVNNFIYGLTTPKLRPPRPNGMWSVTAQwGNIDNQF-DPCALTTAA----GASFVARE 172 Helicobacter pylori
NP_905909    82 LAAIGTAETIHAANRGENIAIIFINNGIYGMTGGQMAPTTLEGMVTATCPqGRNVELNgYPLKIADMLalldGTCLVTRQ 161 Porphyromonas gi...
NP_988391   111 LASIGLNETLQAANRGEKMAVFFVNNTVYGMTGGQMAPTTLIGEKTVTCQtGRDPRFAgYPIHMCELLsslkAPVFIERV 190 Methanococcus ma...
O26801      108 LASIGLNETIQAANRGEKLAVFFVNNTVYGMTGGQMAPTTLVGEVTVTCPtGRDPRYAgYPLHMCELLdnlqAPVFIERV 187 Methanothermobac...
ABB14499     98 MTAIGSAEALHAAIRGEKITSIMINNAIYGMTGGQMSPTTLIGQKTSTSPyGKKAEEAgYPVRFVETLalqeGVAYAART 177 Carboxydothermus...
ZP_00526851 114 LAAIGTAEIIHAANRCEPITIIFVNNGIYGMTGGQMAPTTPLGKKTTTSPfGREKLNEgSPLHVSEMLnsldAPVFIERV 193 Solibacter usita...
AAM06285    116 LASIGLNETLQAANRGEKLAVFFVNNTVYGMTGGQMAPTTLIGEKTTTTPeGRDPRFAgYPLHMCELLdnlkAPIFIERV 195 Methanosarcina a...
Feature 1                                                                                       
CAI07892    178 VDTd---LPHLASVLARAAa----HRGTAFVEILQNCIVFndgaystltdkat--------------rddarviledgkP 236 Azoarcus sp. EbN1
YP_074052   176 HVAdvanIVKTKQYIRKAFeaqvnGLGFSMVEVLGNCPTNwgvtpaeanr-------------------yvlndmlayfP 236 Symbiobacterium ...
CAE26670    178 VTRh---VPKLKELIKAGLq----HPGFAFVEVVSDCTEVygrkndmgssaemvmrqksemrpsayrdsvdepfrstdlP 250 Rhodopseudomonas...
AAC38212    173 SVLd---PQKLEKVLKEGFs---hKGFSFFDDVHSNCHINlgrknkmgeasqmlkwmesrlvskrqfeamspeervdkfP 246 Helicobacter pylori
NP_905909   162 TVHnaaaVRKTKKMIQKAFensmnRKGTSIVEVVSTCNTGwkmspaasnd-------------------wmmenmakqyP 222 Porphyromonas gi...
NP_988391   191 SVSdiahIRKAKRAIKKALeiqrdGKGYAFVEILSPCPTNlkqnaqaaek-------------------fineemekefP 251 Methanococcus ma...
O26801      188 SLAdpkrIRRARRAIKRALeiqrdGKGYAFVEVLSPCPTNlrqdaegaer-------------------flkeemekefP 248 Methanothermobac...
ABB14499    178 AVNnignILKTKAAIKKALqaqidGKGYSIVEILSTCPTNwgvspkealk-------------------wieekmipvfP 238 Carboxydothermus...
ZP_00526851 194 ALGnnkqIMQAAKVIKRAVenqvkGLGFSFVEVLSPCPTIwkmqpveaqh-------------------fiademasifP 254 Solibacter usita...
AAM06285    196 SVSdishIRKARKAVRKALevqrdGKGYAFVEVLAACPTNlrmdaeqaiq-------------------fineqmekefP 256 Methanosarcina a...
Feature 1           
CAI07892    237 LVFG 240 Azoarcus sp. EbN1
YP_074052   237 VGEF 240 Symbiobacterium thermophilum IAM 14863
CAE26670    251 TGIL 254 Rhodopseudomonas palustris CGA009
AAC38212    247 TGVL 250 Helicobacter pylori
NP_905909   223 LGDL 226 Porphyromonas gingivalis W83
NP_988391   252 LQNF 255 Methanococcus maripaludis S2
O26801      249 VKNF 252 Methanothermobacter thermautotrophicus str. Delta H
ABB14499    239 LGEF 242 Carboxydothermus hydrogenoformans Z-2901
ZP_00526851 255 VGNL 258 Solibacter usitatus Ellin6076
AAM06285    257 LRNF 260 Methanosarcina acetivorans C2A

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