1BQG,1ECQ


Conserved Protein Domain Family
D-glucarate_dehydratase

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cd03323: D-glucarate_dehydratase 
Click on image for an interactive view with Cn3D
D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Statistics
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PSSM-Id: 239439
Aligned: 16 rows
Threshold Bit Score: 522.654
Created: 26-Sep-2005
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
active sitetetramer
Conserved site includes 13 residues -Click on image for an interactive view with Cn3D
Feature 1:active site [active site]
Evidence:
  • Structure:1ECQ; E.coli Glucarate dehydratase with bound 4-deoxyglucarate

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                         #    #                                                        
1BQG         15 VITDLKVVPVAGHDSMLLNLSGAHGPLFTRNILILTDSsGHVGVGEVPgg-egIRKTLEdARHLLInqsi-------gny 86  Pseudomonas putida
ZP_00525824   5 IVEEMRVIPVAGHDSMLLNLSGAHAPLFTRNLVILKDSaGNTGVGEVPgg-eaIRATLEeAMPLVAgrsi-------gay 76  Solibacter usita...
1ECQ_A        9 VVTEMQVIPVAGHDSMLMNLSGAHAPFFTRNIVIIKDNsGHTGVGEIPgg-ekIRKTLEdAIPLVVgktl-------gey 80  Escherichia coli
YP_151987     8 VITDMKVIPVAGHDSMLLNIGGAHNAYFTRNIVVLTDNaGHTGVGEIPgg-ekIRKTLEdAIPLVVgktl-------gey 79  Salmonella enter...
NP_388131    19 SISEMKVIPVAGHDSMLLNLSGAHSPFFTRNIVILTDSsGNQGVGEVPgg-ehIRRTLElSEPLVVgksi-------gay 90  Bacillus subtili...
CAB66220      6 TITAVHLTPILVADPPLLNTQGVHQPYTPRLIVEVETAdGVTGVGETYgdakyLELARPfAAKLVGrqvsdlnglftlad 85  Streptomyces coe...
EAA73209      6 IIKEIVITPVAFHDMPLLNSVGVHEPFALRSIIEIITE-DSYGLGESYgdsahLDRLQKaADKIKGlsvys----tnviy 80  Gibberella zeae ...
NP_792709     2 KIIRVTVTPIAFRDPPLLNASGIHEPFALRSIIEIESDnGYIGLGESYgdapaLAIQQQvQNQLIGidpf------nlnq 75  Pseudomonas syri...
EAM24336      3 CISSVVVTPIAFRDPPLLNVSGVHEPWALRSIIEVTIEdGRYGLSESYgdeqtLSQLQTvASHLVGvdvf------hlne 76  Chromohalobacter...
ZP_00410973  19 KITDVTITPIAFSDPPLLNAVGVHEPLVHRVVIEIRTAnGLLGLGECAggqsrLANLAVgARAIRGvs----------vf 88  Arthrobacter sp....
Feature 1                                                                               #       
1BQG         87 QSLLNKVRNafadrdvggrg---lqtfdlriavhAVTAVESALLDLLGQHLQVPVAALLGegqqRDAVEMLGYLFYvgdr 163 Pseudomonas putida
ZP_00525824  77 TNILDSVSRqfadrdaggrg---lqtfdqrttihAVTALEAALLDLLGKHLGVPVAALLGegqqRKTVDVLGYLFYvgdr 153 Solibacter usita...
1ECQ_A       81 KNVLTLVRNtfadrdaggrg---lqtfdlrttihVVTGIEAAMLDLLGQHLGVNVASLLGdgqqRSEVEMLGYLFFvgnr 157 Escherichia coli
YP_151987    80 KNVLTAVRNqfadrdaggrg---lqtfdlrttihVVTGIEAAMLDLLGQHLGVNVASLLGdsqqRSEVEMLGYLFFvgnr 156 Salmonella enter...
NP_388131    91 QAILQTVRKqfgdqdrggrg---nqtfdlrttvhAVTALEAALLDFLGKFLQEPVAALLGegkqRDEVKMLGYLFYigdr 167 Bacillus subtili...
CAB66220     86 EVAVDSSRVfgqvdvgglrg----vqtadklrlsVVSGFEVACLDALGKALGLPVHALLGgk-vRDAVEYSAYLFYkwad 160 Streptomyces coe...
EAA73209     81 QRCVESLRNdtntggdgmgg----mvvtasvadkVFSPFEVACLDLQGKLAGISVSDLLGgr-vRDSVQYSAYLFYkwgg 155 Gibberella zeae ...
NP_792709    76 LRSIVQATVaahkpaslagaelapgshaskavsnAYSAFEVAFLDLQARSMNLPLVDLLGga-iRERIPFSAYLFFkyaq 154 Pseudomonas syri...
EAM24336     77 LKSIVEASVshksqengiela--pgtnqattvprIFAAFEVAFLDLMGKITERSVCDLLGgk-vRDAVPYSAYLFYkygh 153 Chromohalobacter...
ZP_00410973  89 DTTLMELLInealagep----------svferaaVFSAFEVAALDIQGHATGRSVSELLGgt-vRDEVPFSAYLFYkwae 157 Arthrobacter sp....
Feature 1                                                      # #                           # #
1BQG        164 nktdlgyrseheadnewfrlrnkealtPESVVALAEAAYdrYGFKDFKLKGGVLrgedeIAAVTALSERFPdARITLDPN 243 Pseudomonas putida
ZP_00525824 154 gktdlpyasepesiddwlrlrheealsVDAVVRLAEAAQarYGFRDFKLKGGVRaggeeMEAIVALAERFPeARITIDPN 233 Solibacter usita...
1ECQ_A      158 katplpyqsqpddscdwyrlrheeamtPDAVVRLAEAAYekYGFNDFKLKGGVLageeeAESIVALAQRFPqARITLDPN 237 Escherichia coli
YP_151987   157 katplpyqsqpdeqcdwyrlrheeamtPETVVRLAEAAYekYGFNDFKLKGGVLageeeAESIVALAKRFPqARVTLDPN 236 Salmonella enter...
NP_388131   168 nrttlpyqsdeqsdcawfrlrheealtPEAIVRLAESAQerYGFQDFKLKGGVLrgeeeIEAVTALSKRFPeARITLDPN 247 Bacillus subtili...
CAB66220    161 hpegvas----------ekddwgaavdPAGVVAQARAFTerYGFTSFKLKGGVFppeeeIAAVKALAEAFPgHPLRLDPN 230 Streptomyces coe...
EAA73209    156 hpgde-------------ddeygpaldPEGVVKQAKKIIdeYGFKAIKLKGGVFppadeVAAIKALHKAFPgVPLRLDPN 222 Gibberella zeae ...
NP_792709   155 hidtpy-----------ppdnwgealnEEQIVAQARRMIeaYGFKSIKLKAGALdpeheVSCIKALKKAFPgYPLRIDPN 223 Pseudomonas syri...
EAM24336    154 hqfsqdd----------wvdawgevltPEDIVRSARQMIdqYGFQSIKLKGGVFepeqeLLAVRALREAFPeYPLRIDPN 223 Chromohalobacter...
ZP_00410973 158 hpaldgkp--------aisdewgealdPEGIVRQARKMIseYGFKSIKLKGGVFppaqeIEAIKALRQAFPgLPLRLDPN 229 Arthrobacter sp....
Feature 1                             #                            #                            
1BQG        244 GAWSLkEAVALCRDQHhvLAYAEDPCgaengysGREVMAEFRRSTGLRTATNMIATDWRQMGHAIqlqSVDIPLADPHFW 323 Pseudomonas putida
ZP_00525824 234 GAWSLrQAIALCKGRGdvLAYAEDPCgaeggysGREVMAEFRRATGLPTASNMIATDWRQLGHAIqlhSVDIPLADPHFW 313 Solibacter usita...
1ECQ_A      238 GAWSLnEAIKIGKYLKgsLAYAEDPCgaeqgfsGREVMAEFRRATGLPTATNMIATDWRQMGHTLslqSVDIPLADPHFW 317 Escherichia coli
YP_151987   237 GAWSLnEAISIGKYLKgsLAYAEDPCgaeqgfsGREVMAEFRRATGLPTATNMIATDWRQMGHTLslqSVDIPLADPHFW 316 Salmonella enter...
NP_388131   248 GAWSLeEAIALCKGKQdvLAYAEDPCgdengysAREVMAEFRRATGLPTATNMIATDWREMGHAIqlhAVDIPLADPHFW 327 Bacillus subtili...
CAB66220    231 GAWSVeTSLKVAAELGdvLEYLEDPAl------GTPAMAEVAAKTGVPLATNMCVTTFAEIQEAFtkgAVQVVLSDHHYW 304 Streptomyces coe...
EAA73209    223 AAWTVeTSKWVAKELEgiVEYLEDPAg------EIEGMAAVAKEASMPLATNMAVVAFDHLPPSIlqdAVQVILSDHHFW 296 Gibberella zeae ...
NP_792709   224 GNWSLeTSIRMAQLLGddLQYYEDPTp------GLDGMSELHKRTGLPLATNMVVTDFDEFRRSValnSVQIVLADHHYW 297 Pseudomonas syri...
EAM24336    224 GGWTPeTTRRLLPQMEgvLQYLEDPAs------GKDSMAEVHRSATMPLATNMCVIGFFDFPEAIakqSVDVILSDHHYW 297 Chromohalobacter...
ZP_00410973 230 TAWTVeTSRWVAQETSglLEYLEDPTp------GLEGMAAVATTAAMPLATNMCVVAFDHIKRGVelgAVQVILGDHHYW 303 Arthrobacter sp....
Feature 1                             ###                          #                            
1BQG        324 t-MQGSVRVAQMCnEWGLTWGSHSNNHFDISLAMFTHVAAAAPGnitAIDTHWi--wQDGQRltKEPLQikGGLVEVPKK 400 Pseudomonas putida
ZP_00525824 314 t-MRGSVRVAQLChEWGLTWGSHSNNHFDVSLAMFTHVAAAAPGkitAIDTHWi--wQDGQRltKEPFRieGGKIAVPEA 390 Solibacter usita...
1ECQ_A      318 t-MQGSVRVAQMChEFGLTWGSHSNNHFDISLAMFTHVAAAAPGkitAIDTHWiw-qEGNQRltKEPFEikGGLVQVPEK 395 Escherichia coli
YP_151987   317 t-MQGSVRVAQMChEFGLTWGSHSNNHFDISLAMFTHVAAAAPGkitAIDTHWiw-qEGNQRltKEPFEikGGMVQVPTK 394 Salmonella enter...
NP_388131   328 t-MQGSVRVAQMChDWGLTWGSHSNNHFDISLAMFTHVAAAAPGritAIDTHWi--wQDGQRltKQPFEisSGCVKVPDK 404 Bacillus subtili...
CAB66220    305 ggLRNTQQLAAVCrTFGVGVSMHSNTHLGISLAAMTHVAATVPDlhhACDSHYp---WQSEDvlTERLAfdGGKVAVSDA 381 Streptomyces coe...
EAA73209    297 ggLRKSQTLASICaTWGLRLSMHSNSHLGISLAAMTHLASATPNldyACDTHWpwkrRDEDVviEGALKwkDGGVIVPSG 376 Gibberella zeae ...
NP_792709   298 ggLRDTQALAKMCdTFGLGVSMHSNSHLGISLMAMAHVAASVPNldyACDTHYpwqeADEEVikGGKLPivDGCVSITRA 377 Pseudomonas syri...
EAM24336    298 ggLQATRELARVCeTWGLGLSMHSNSHLGISLMAMTHAAAAIDNltyACDTHYp--wQEEEVivGGKVSfeEGSVRVPDA 375 Chromohalobacter...
ZP_00410973 304 ggLRHTRELGAICqTFGIGLSMHSNSHLGISLAAMVHVAASTPAltyACDTHYpw-nGHNDVvkPGALRfvDGSVKVPAG 382 Arthrobacter sp....
Feature 1                             
1BQG        401 PGLGVELDWDALMKAHEVYKSM 422 Pseudomonas putida
ZP_00525824 391 PGLGVELDMVEVGKAHAVYRGM 412 Solibacter usitatus Ellin6076
1ECQ_A      396 PGLGVEIDMDQVMKAHELYQKH 417 Escherichia coli
YP_151987   395 PGLGVELDMDQVMKAHELYQKH 416 Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150
NP_388131   405 PGLGVDIDMEQVEKAHEIYRKM 426 Bacillus subtilis subsp. subtilis str. 168
CAB66220    382 PGLGVALDRERLAFLHRRWLDD 403 Streptomyces coelicolor A3(2)
EAA73209    377 PGLGVELDRERLAKLHQQYVDC 398 Gibberella zeae PH-1
NP_792709   378 PGLGLELDYDQLGKLNDQYHSC 399 Pseudomonas syringae pv. tomato str. DC3000
EAM24336    376 PGLGVELDRDALQKLARNFQEC 397 Chromohalobacter salexigens DSM 3043
ZP_00410973 383 PGLGVQLDREKLAELHQQYLDA 404 Arthrobacter sp. FB24

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