Conserved Protein Domain Family
RspA

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cd03322: RspA 
The starvation sensing protein RspA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Statistics
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PSSM-Id: 239438
Aligned: 6 rows
Threshold Bit Score: 621.381
Created: 22-Dec-2005
Updated: 25-Oct-2021
Structure
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Aligned Rows:
 
putative metalputative active
Feature 1:putative metal binding site [ion binding site]
Evidence:
  • Comment:based on the homology to other subfamilies

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                       
NP_756774     2 KIIAVDVFVTCP-GRNFVTLKITTEs-gLCGLGDATLNGRELSVASYLKDhLCPQLIGRDasrIEDIWQFFYKGAYWRRG 79  Escherichia coli...
YP_048316     5 IITDIECLVTRPdRHNLVTVVVHTNk-nVTGYGCATFQQRPLAVKAMVDEyLKPLLLGRDanhIEDLWHMMMVNAYWRNG 83  Erwinia carotovo...
CAC16962      2 KITAADVVVTSP-GRNFVTLRITTEd-gLTGLGDATLNGRELAVEAYLREhVAPLLLGRDahaVEDTWQYLYRGAYWRRG 79  Streptomyces coe...
ZP_00302226   2 KITAARVIITCP-GRNFVTLKIETDq-gVYGIGDATLNGRELSVVAYLQEhVAPCLIGMDprrIEDIWQYVYRGAYWRRG 79  Novosphingobium ...
CAA50307      3 RIESVEVFVASP-GRTFVTLRITTTd-gVTGLGDATLNGRELAVASYLRDhVVPLLIGRDparIEDTWQFLYKGAYWRRG 80  Streptomyces amb...
ZP_00522435  43 KIKDISVIECQPaGVRLTVVKITTDqdgLYGYGCATFTQRADLVKPAVERyLKPFLMGKTtdrIEDIWQSCYDSSYWKNG 122 Solibacter usita...
Feature 1                                                                                       
NP_756774    80 PVTMsAISAIDMALWDIKAKAANMPLYQLLGGasREGVMVYCHTtgrtideVLEDYAKHqqmGFKAIRVQCgvpgmqtty 159 Escherichia coli...
YP_048316    84 PVINnAVAGVDMALWDIKGKLADMPLYHLFGGksRDAIAAYSHAasdtldgLYQEVERLyaqGYRHIRCQLgfyggnpda 163 Erwinia carotovo...
CAC16962     80 PVTMaAVAAVDMALWDIKGKAAGMPVYQLLGGacRTGALAYGHAsgrdipeLLDSVREHladGFRAVRIQSgipgldsvy 159 Streptomyces coe...
ZP_00302226  80 PVTMrAIAAVDMALWDIKAKMAGMPLYQLLGGrsRDGIMVYGHAngsdiaeTVEAVGHYidmGYKAIRAQTgvpgikday 159 Novosphingobium ...
CAA50307     81 PVTMtAIAAVDTALWDILGKTAGLPVHQLLGGrsRDGVLVYSHAsgtdvpsLLDDVERHlelGYKAVRAQAavpgvggty 160 Streptomyces amb...
ZP_00522435 123 PVLNnAISGIDQALWDIKGRQAGLPVYQLAGGkcREAADCYAHAdgadfpnVVEAAKRYmaqGFRHVRVQIgvpgmagyg 202 Solibacter usita...
Feature 1                                                                    #                  
NP_756774   160 glakgkglayep---------atkglwpeeqlwssekyldftPKLFEAVRNKFGfnEHLLHDMHHRltpiEAARFGRSIE 230 Escherichia coli...
YP_048316   164 lhstrqp--------------------tegayydqdqymantLAMFRALREKYGdrFHILHDVHERlfpnQAVQFAKAVE 223 Erwinia carotovo...
CAC16962    160 gvaasaagdgdrydyeparrtgaahprpteetwdtraylrhmPTVFEAVRHTFGpeLPLLHDGHHRmtpiQAARLGKDLE 239 Streptomyces coe...
ZP_00302226 160 gvgrgklyyep-----------adaslpsvtgwdtrkalnyvPKLFEELRKTYGfdHHLLHDGHHRytpqEAANLGKMLE 228 Novosphingobium ...
CAA50307    161 gvrkgrvyepa------------aselpdeqpwdteayldfaPRYLEAVRERFGfgFHLLHDVHHRltpnEAARFGKSVE 228 Streptomyces amb...
ZP_00522435 203 ssrgdtkvq----------------alhskpvfepayyvrraLKLFEVCRTELGeeIELLHDMHERvspnQAVQFVKDAE 266 Solibacter usita...
Feature 1              #                         #                                              
NP_756774   231 dyrLFWMEDPTPaenqECFRLIRqhtvTPIAVGEVFnsiWDCKQLIeeqLIDYIRTTITHAGGITGMRRIADFAslyqVR 310 Escherichia coli...
YP_048316   224 vyrPYFIEDILPpaqnEWLAQIRsqsaVPLATGELFnnpAEWQNLVinrQVDFIRCHVSQIGGITPALKLGAFCqnfgVR 303 Erwinia carotovo...
CAC16962    240 pydLFWLEDATPgedqGALRLIRehttTPLAIGEVFnsvHDYTTLLqerLIDYVRSAVTHTGGITAVRKLLDMAavygIK 319 Streptomyces coe...
ZP_00302226 229 pyqLFWLEDCTPaenqEAFRLVRqhtvTPLAVGEIFntiWDAKDLIqnqLIDYIRATVVGAGGLTHLRRIADLAslyqVR 308 Novosphingobium ...
CAA50307    229 asrLFWMEDPTPaenqESFRLIRqhttTPIAVGEVMnsiWDVQHLIteqLIDYVRTTVVHAGGITHLRRIFDLAalhqVR 308 Streptomyces amb...
ZP_00522435 267 kfkMFFMEDPLSpediAYFRQIRqqcaTPIAMGELFnspHEWTPLIserLIDYIRVHVSQAGGFTPARKIAILGetfgVK 346 Solibacter usita...
Feature 1                                                                                       
NP_756774   311 TGSHgpsdlsPVCHAAALHFDLWVPNFGVQEYmgyseqmlevfphswrfdeGYMHPGdePGLGISFDEKLAAKYPydpay 390 Escherichia coli...
YP_048316   304 LAWHcppdmtPIGAAVNIHLNIHLHNAAIQEFvaypentrkvfpqavepenGYLYPIerPGIGVGIDLDAARQFPvvyrp 383 Erwinia carotovo...
CAC16962    320 SGMHgptdisPVGMAAALHLDLAVHNFGIQEYmrhapdtlevfrtsyrfedGLLHPGeaPGLGVELDDGAAARFPyepay 399 Streptomyces coe...
ZP_00302226 309 TGCHgatdlsPVTMGCALHFDTWVPNFGIQEYmrhteetdavfphdywfekGELFVGetPGHGVDIDEELAAKYPykpay 388 Novosphingobium ...
CAA50307    309 TGSHgatdlsPVSMAAAVHLDIAVPNFGIQEYmghadetaevfrtgvtfadGMLHPSdePGLGVEYDEKAAERFPyqrry 388 Streptomyces amb...
ZP_00522435 347 TAWHgpgdvsPIGHMANVTLDLVSYNFGIQEYspfngrtqeifsgcpvmkdGYLYASekPGWGIEVDEKLAAKAPftdrp 426 Solibacter usita...
Feature 1                           
NP_756774   391 ------lpvaRLEDGTLWNW 404 Escherichia coli CFT073
YP_048316   384 h----ewtqsRLPDGTMHTP 399 Erwinia carotovora subsp. atroseptica SCRI1043
CAC16962    400 ------lpvnRLSDGTVHDW 413 Streptomyces coelicolor A3(2)
ZP_00302226 389 ------lpvaRLEDGTMWNW 402 Novosphingobium aromaticivorans DSM 12444
CAA50307    389 ------lpvaRRLDGSVHDW 402 Streptomyces ambofaciens
ZP_00522435 427 dglnggwgeiRRRDGTVIKQ 446 Solibacter usitatus Ellin6076

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