1DTN,1MNS


Conserved Protein Domain Family
mandelate_racemase

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cd03321: mandelate_racemase 
Click on image for an interactive view with Cn3D
Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Statistics
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PSSM-Id: 239437
Aligned: 6 rows
Threshold Bit Score: 566.726
Created: 6-Oct-2005
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
active site
Conserved site includes 8 residues -Click on image for an interactive view with Cn3D
Feature 1:active site [active site]
Evidence:
  • Structure:1DTN; Pseudomonas mandelate racemase with bound competitive inhibitor (S)-atrolactate
  • Citation:PMID 7893689

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                       
1DTN          4 VLITGLRTRAVNVPLayPVHTAVGTVGTaPLVLIDLATSAGVVGHSYLFAYTPVALKSLKQLLDdMAAMIVNEPLAPVSL 83  Pseudomonas aeru...
1MNS          2 VLITGLRTRAVNVPLayPVHTAVGTVGTaPLVLIDLATSAGVVGHSYLFAYTPVALKSLKQLLDdMAAMIVNEPLAPVSL 81  Pseudomonas putida
ZP_00285102   4 LVIEGLRARAVNVPLqyPVKTSVGTVATsPLVLIDLVTNGNVTGTSYVFTYTPLALKSVQQMLQdLAAVIKGMPLVPRLI 83  Burkholderia fun...
ZP_00522277   2 PKITGVRVRAVRVPMq-PHLTASGTVAEsPLVLTDVLTDEGVEGHSITFTYTAAALKPTGGLIAnLAPLLKGEELAPAEL 80  Solibacter usita...
ZP_00505865   6 LTVRAIEATLVVVPMrrALGTSAMLVTQaPLLLLDLQTEEGITGRAYLFCYLEAAGAAALALVRdINAELVGKTAAPAAV 85  Polaromonas sp. ...
NP_774265     5 VRIKRFNARPVIVPMnlPLQTSTGAVARaPLVLIDCETDQGARGHAYLFSITPSALKPLTAMVTeMSELLAGDELLPFEI 84  Bradyrhizobium j...
Feature 1                                                                                       
1DTN         84 EAMLAKRFCLAGYTGLIRMAAAGIDMAAWDALGKVHETPLVKLLGANARPVQAYDSHsldg--vklATERAVTAaeLGFR 161 Pseudomonas aeru...
1MNS         82 EAMLAKRFCLAGYTGLIRMAAAGIDMAAWDALGKVHETPLVKLLGANARPVQAYDSHsldg--vklATERAVTAaeLGFR 159 Pseudomonas putida
ZP_00285102  84 EQALDSRFRLIGNTGIVRIACAGIDMAVWDAKAKSLNLPLVELLGGKARPLAAYDSHsmdg--ielATSRAKTAaeSGYA 161 Burkholderia fun...
ZP_00522277  81 ARKLAGRYRLLGMQGLVGMALAGLDMALWDALARVHKLSLAGLLGGVPKPIRAYGAVgydg--aanCAAGAEEWakRGFT 158 Solibacter usita...
ZP_00505865  86 RRALEARFRLLGARGIVSMLMAGIDIACWDALAICAGLPLATLLGAQPRPIPAYNSNglglldaraAADEALELvsEGFH 165 Polaromonas sp. ...
NP_774265    85 ERKLTQRFTLLGLAGLQRLAQSGIDMAAWDALARSKGLPLARLLGGAPKPVKAYNSKglgimpagaAVEEAHRLlaEGFH 164 Bradyrhizobium j...
Feature 1         # #                            #                         #                    
1DTN        162 AVKTKIGYPALDQDLAVVRSIRQAVGDDFGIMVDYNQsldvpAAIKRSQALQQEGVTWIEEPTLQHDYEGHQRIQSKLNV 241 Pseudomonas aeru...
1MNS        160 AVKTKIGYPALDQDLAVVRSIRQAVGDDFGIMVDYNQsldvpAAIKRSQALQQEGVTWIEEPTLQHDYEGHQRIQSKLNV 239 Pseudomonas putida
ZP_00285102 162 AIKTKIGYPTLEEDLQVIRSIRAAIGPQVQIMVDYNQgltvpEAIRRGRAIEQEGIGWIEEPTLQYDYAGHATVREALHV 241 Burkholderia fun...
ZP_00522277 159 GVKAKIGYPTAAEDLEVIRGMRRACGKGMSLMVDYNQsltpaEAVERLRGVDGEGLTWIEEPTLAHDYEGHAQIAREIRT 238 Solibacter usita...
ZP_00505865 166 AIKMRLGRPLAKDDLAAVRAVKQALPAGIALMADFNQalsrnAAVERCQQLDDEGLYWIEEPVRHDDYATSAELTALLRT 245 Polaromonas sp. ...
NP_774265   165 AAKIRVGRPDAREDLAVVRAVRKAVGDQVTLMCDYNQaltvtEAIRRGEMLDDEGLSWIEEPIRHDDYEGCARIADALRT 244 Bradyrhizobium j...
Feature 1            #                      #                          #                   #    
1DTN        242 PVQMGENWLGPEEMFKALSIGACRLAMPDAMKIggVTGWIRASALAQQFGIPMSSHlfqEISAHLLaATPTAHWLQRLDL 321 Pseudomonas aeru...
1MNS        240 PVQMGENWLGPEEMFKALSIGACRLAMPDAMKIggVTGWIRASALAQQFGIPMSSHlfqEISAHLLaATPTAHWLERLDL 319 Pseudomonas putida
ZP_00285102 242 PIQMGENWFGPDEMHKALSAQACDLCMPDLMKIggVSGWLKASALAEQYGLPMSNHifqEFSVHLLsVSPTCHWLEKMDL 321 Burkholderia fun...
ZP_00522277 239 PIQCGENWWGALDMRHAIAAGASDYMMPDVMKIggVTGWLRAAALGEAHSIRLSNHlwpEISAQLLsVTPTAHWLEYADW 318 Solibacter usita...
ZP_00505865 246 PVQIGENFAGPRAMAQALAQRACDFVMPDLERIggVSGWIDASALANVAGIELSSHlfpEVSAHLLaSTPTAHWIEYVDW 325 Polaromonas sp. ...
NP_774265   245 PVQIGENFDSAFSMQAALSAEACDYVMPDVQRIggVTGWLRAAALAHAAGIEMSTHlfsEVSAHLLcVTPTAHWLEYVDW 324 Bradyrhizobium j...
Feature 1                                            
1DTN        322 AGSVIEPTLTFEGGNAVIPDLPGVGIIWREKEIGKYL 358 Pseudomonas aeruginosa
1MNS        320 AGSVIEPTLTFEGGNAVIPDLPGVGIIWREKEIGKYL 356 Pseudomonas putida
ZP_00285102 322 AGPILEPVLEFSDGKAHFGDEPGAGIVWREEEIRRFL 358 Burkholderia fungorum LB400
ZP_00522277 319 WNPILAEPLRVENGMAICDGVTGTGVEWNQTAVEKYL 355 Solibacter usitatus Ellin6076
ZP_00505865 326 ADAILQEPLKVVDGCLSAPARPGNGLTWDPDAVRHYQ 362 Polaromonas sp. JS666
NP_774265   325 ADAVLSTRLKIKDGFALPNEEPGNGIAWDEAAVKKYL 361 Bradyrhizobium japonicum USDA 110

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