1XPG,1U1J


Conserved Protein Domain Family
CIMS_N_terminal_like

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cd03312: CIMS_N_terminal_like 
Click on image for an interactive view with Cn3D
CIMS - Cobalamine-independent methonine synthase, or MetE, N-terminal domain_like. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers the N-terminal barrel, and a few single-barrel sequences most similar to the N-terminal barrel. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Side chains from both barrels contribute to the binding of the folate substrate.
Statistics
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PSSM-Id: 239428
Aligned: 76 rows
Threshold Bit Score: 420.015
Created: 12-Dec-2005
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
THF binding
Conserved site includes 5 residues -Click on image for an interactive view with Cn3D
Feature 1:THF binding site
Evidence:
  • Comment:THF (tetrahydrofolate) is sandwiched between the C-terminal catalytic domain and this N-terminal domain
  • Structure:1XPG: T. maritima cobalamin-independent methionine synthase complexed with methyltetrahydrofolate
  • Structure:1UIJ: A. thaliana cobalamin-independent methionine synthase complexed with methyltetrahydrofolate

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                    #  #                                                               
1XPG_A       34 KAYAFGFPKIGEKREFKKALEDFWKGkiTEEQFEEEXNKLRXYXVENYRk-NVDVIPSNEl---sYYDFVLDTAVXVGAV 109 Thermotoga maritima
ZP_00772241  21 TATITGSPRIGPRRELKRATEGYWAGrtSRSELEAVAATLRRDTWSALAaaGLDSVPVNTf---sYYDQMLDTAVLLGAL 97  Mycobacterium tu...
YP_121444     9 GSSILGYPRIGPHRELKRALESYWRGslSREELLEVGRDIQERQFNELAatGLTQVPGNTf---sFYDHVLDNALMFGAV 85  Nocardia farcini...
BAC18019      6 SSTIAGVPRIGAHRELKFALEGFWSGtvSGRELGQTATTLTNDYCDQLAaaGLDSIPTAGr---sYYDAMLDTTALLGVF 82  Corynebacterium ...
CAI36386      4 NATVAGVPRIGPDRELKKALEGYWRDnsTGRNLATTATRLVNDYTDELLaaGLDSAAFSGr---sFYDAVLDTTALLGLL 80  Corynebacterium ...
NP_787290     3 FGTILGYPRLGPRRELRDYLYSYWQGkiSEEVLEEKTRLLREETHRRLIllGLSAENYSIpesfsYYDHVLDAAVHVGAV 82  Tropheryma whipp...
EAM74085      9 TATVLGYPRTGADREAKKALEALWAGraDLASTERALAGVRAATVRRLNslGLPAHDASIpsafsAYDQVLDAAVAVGAV 88  Kineococcus radi...
AAH34830      2 ASHIVGYPRMGPKRELKFALESFWDGksSADDLKKVSADLRSSIWKQMSdaGIKYIPSNTf---aYYDQVLDTTAMLGAV 78  house mouse
AAL33589      2 ASHIVGYPRMGPKRELKFALESFWDGksTAEDLEKVATDLRASIWKQMAdaGIKYIPSNTf---sYYDQVLDTTAMLGAV 78  maize
AAF81245     11 RATVYGYPRQGPNRELKKAIEGYWKGrvDAAALRETAAELRRGTWQQLAeaGVHDVPTGDf---sYYDHVLDTSVMVGAV 87  Streptomyces gri...
Feature 1                                             #    # #                                  
1XPG_A      110 PERFGey---------rGLSTYFDXARGg---kALEXTKFFNTNYHYLVPEIETeefy-lleNKPLEDYLFFKSKG-IET 175 Thermotoga maritima
ZP_00772241  98 PPRVSpv--------sdGLDRYFAAARGtdqiaPLEMTKWFDTNYHYLVPEIGPsttftlhpGKVLAELKEALGQG-IPA 168 Mycobacterium tu...
YP_121444    86 PKRFQpyqd-----vmdPLDFYFLMARGrpdlpPLELVRYINTNYHYRQPELAPdtefslhpEALLDEFDRAMAQG-IEL 159 Nocardia farcini...
BAC18019     83 PERFQnlddhpndglpaHIDRYFATARGtaelpASAMTKWFDTNYHYLVPELSAdtrfilddTALLTDIHDQLTRG-HDV 161 Corynebacterium ...
CAI36386     81 PERVAdiadhdndglprFIDRYFAAARGtkelpASAMTKWFDTNYHYIVPELAKdsrvelddSAFLEDIRDQVTRAgEAV 160 Corynebacterium ...
NP_787290    83 PSRFSwlln----dgivDLNAYFTLARGdrslaPLESLRYFGSSYHYLVPEIDGnthfaltsHRVITQFEQAKQAG-VNV 157 Tropheryma whipp...
EAM74085     89 PPRFAdvvge---dgrvDLAGYSTIARGrgadaPLEMTKWFDTNYHYLVPEIGPgtafrfadDRGVREFSEALADG-FLT 164 Kineococcus radi...
AAH34830     79 PPRYGwtg------geiEFDVYFSMARGnatvpAMEMTKWFDTNYHYIVPELGPdvkfsyasHKAVNEYKEAKALG-VDT 151 house mouse
AAL33589     79 PERYSwtg------geiGFDTYFSMARGnatvpAMEMTKWFDTNYHFIVPELGPntkfsyasHKAVNEYKEAKALG-VDT 151 maize
AAF81245     88 PGRHRaav------dadALDGYFAMARGtqdvaPLEMTKWFDTNYHYLVPELGPdtvftadsAKQVAECAEALALG-HTP 160 Streptomyces gri...
Feature 1                                                                                       
1XPG_A      176 APWVIGPFTFLYLSKRngewirrpnQXEKLLESLVSVYKEVFEKLVENGCKEILVNEPAFVCDLe-------kAHWDLIL 248 Thermotoga maritima
ZP_00772241 169 RPVIIGPITFLLLSKAvdg----agAPIERLEELVPVYSELLSLLADGGAQWVQFDEPALVTDLs-------pDAPALAE 237 Mycobacterium tu...
YP_121444   160 RPVVLGPASLLLLSKAgdqpgeaefDTLSLLDKLLPVYEELFEILAKRGATCVQLDEPAYTSERs-------eAELAAFE 232 Nocardia farcini...
BAC18019    162 RPVLIGPLTYLSLSRTt--------DGSDPLDHLETLFEVFERLLAKLPTPWVQLDEPSLVTDVa-------pEVLERVR 226 Corynebacterium ...
CAI36386    161 RPVLVGPLTYLALSRTvd-----gsDAFAHLEEIFDAYSRLLKRIADRGVKWVQFDEPILVTDFayadaaaneDLLKRTR 235 Corynebacterium ...
NP_787290   158 RPTILGPVSLLMMSRShgp---naiNPIERLQDLVPVYSELFEKLYNSGCKFVQVDEPAVTHNTfg-----iqKSQELLV 229 Tropheryma whipp...
EAM74085    165 RPVVVGPVTFLLLAKAaggs-pegfAPISRLDDLLGAYEDLLTAYAAAGAEWVQLDEPALVSDSata---gveGLAGLVR 240 Kineococcus radi...
AAH34830    152 VPVLVGPVSYLLLSKPakgv-eksfNLLSLLPKILAIYKEVVTELKAAGASCIQFDEPLLVMDLd-------sHKLQAFT 223 house mouse
AAL33589    152 VPVLVGPVSYLLLSKPakgv-ekgfPLLSLLSSILPVYKEVIAELKAAGASWIQFDEPTLVLDLd-------sDKLAAFS 223 maize
AAF81245    161 RPVLVGPVTYLLLAKPapgv-aadfEPLTLLDRLLPVYAEVLADLRAAGAAWVQLDEPALVQDRt-------pAELNAAA 232 Streptomyces gri...
Feature 1                                                                                       
1XPG_A      249 NVYRELSe--------fPLTVFTYYDsv--sDYEACVSL-PVKRLHFDFVsn----eeNLKNLEkhgfpedkKLVAGVIN 313 Thermotoga maritima
ZP_00772241 238 AVYTALCsvs----nrpAIYVATYFGdp-gaALPALART-PVEAIGVDLVaga--dtsVAGVPEla----gkTLVAGVVD 305 Mycobacterium tu...
YP_121444   233 RAYQRLSkap----lrpRILVTGQYGdf-geALTILAGT-GVEAIGLDLAshridpdeLAKVPGir----rkRLYAGVIS 302 Nocardia farcini...
BAC18019    227 AGYARLAtr-------gGVFVNTYFGag-dqALDTLAGL-GLGAIGVDLVs------dGVTALEawk--geeLLVAGIVD 289 Corynebacterium ...
CAI36386    236 AGYEKLVeaagagdegvNLLIQTYFGdg-naAIELLSGS-GVAAFGVDLVtgg---aaAAELPAwng---keLLAAGVVD 307 Corynebacterium ...
NP_787290   230 DAYKFLSsrk----lrpEILVAMSYGna-adQVDALATT-GVEAMAFNLIdg-----aVPFANPsla---dkALFGGVID 295 Tropheryma whipp...
EAM74085    241 AAYDRLAave----grpRLLVATPYGdp-geLLEPLAAT-AVEGLALDLVrg-----dVPARPEllt---gkTVVGGVVD 306 Kineococcus radi...
AAH34830    224 DAYAELEstl----sglNVIVETYFAdvtpeAYKTLISLkGVTGFGFDLIrg----tqSLELIKggfp-sdkYLFAGVVD 294 house mouse
AAL33589    224 AAYAELEsvl----sglNVLVETYFAdvpaeSYKTLTSLsSVTAYGFDLVrg----tqTLGLVTsagfpagkYLFAGVVD 295 maize
AAF81245    233 RAYRELGgla----drpQLLVASYFGrl-geALTVLAKA-PVDGLALDFTesg---agNLDDLAaagglpgkRLVAGVVN 303 Streptomyces gri...
Feature 1                                                                                
1XPG_A      314 GRQPWKvDLRKVASLVEKLGa------SAISNSCPLFHLPVTLELENNLpggLKEKLAFAKEKLEELKXLKDF 380 Thermotoga maritima
ZP_00772241 306 GRNVWRtDLEAALGTLATLLgsa--atVAVSTSCSTLHVPYSLEPETDLddaLRSWLAFGAEKVREVVVLARA 376 Mycobacterium tuberculo...
YP_121444   303 GRNVWRaDRYVTLEYLNELAkvc--pdLVVSTGCTLLHVPYDLLVEYDLegnVADRLAFAKQKVGEVVSLAKA 373 Nocardia farcinica IFM ...
BAC18019    290 GRNVWRtDLCAALGTLRRLQar---gpVAVSTSCSLLHVPYALTAETGLnpeVREWLAFGEEKVREVVALADA 359 Corynebacterium efficie...
CAI36386    308 GHNVWRtDLDAALKTLQGLKer---gpVAVSTSCSLLHVPYSLQREQNLnaeVQKWLAFGSEKIREVAALSRT 377 Corynebacterium jeikeiu...
NP_787290   296 GRNIWRgDLAAAYYKLERLRels--gnVVASTSASLFHLPLSLDTEDLGd-hLKEWLAFADEKVRQVMILARG 365 Tropheryma whipplei str...
EAM74085    307 GHNVWRaDLVAALARLRTLEgpa--arVVAGTSTSLLHVPHDVTRETALderLRGWLAFADQKVSEVVVLGRA 377 Kineococcus radiotolera...
AAH34830    295 GRNIWAnDLAASLALLQSLQglvgkdkLVVSTSCSLLHTAVDLVNETKLddeIKSWLAFAAQKVVEVNALAKA 367 house mouse
AAL33589    296 GRNIWAdDLATSLSTLQSLEavvgkdkLVVSTSCSLMHTAVDLVNETKLdseIKSWLAFAAQKVVEVDALAKA 368 maize
AAF81245    304 GRNIWInDYEKSLATLGTLLgla--drVDVSASCSLLHVPLDADAERDIdpqIARWLAFARQKTEEIVVLARG 374 Streptomyces griseus su...

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