1XPG,1XDJ


Conserved Protein Domain Family
CIMS_C_terminal_like

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cd03311: CIMS_C_terminal_like 
Click on image for an interactive view with Cn3D
CIMS - Cobalamine-independent methonine synthase, or MetE, C-terminal domain_like. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers the C-terminal barrel, and a few single-barrel sequences most similar to the C-terminal barrel. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Sidechains from both barrels contribute to the binding of the folate substrate.
Statistics
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PSSM-Id: 239427
Aligned: 98 rows
Threshold Bit Score: 188.205
Created: 12-Dec-2005
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 4 residues -Click on image for an interactive view with Cn3D
Feature 1:zinc-binding site [ion binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                       
1XPG_B      437 PTTTIGSFPQTPevrkxrskyrkgeiskeEYEAFIKEQIKKAIELqeeiGLDVLVHGEfertdXVEFFAEKLngiattqn 516 Thermotoga maritima
NP_391775    21 RADQVGSLLRSEpvkkarlqkaagemtaeQLRQIENDEIIRIVEKqketGLNVVTDGEfrrawWHFDFLENLdgvep--- 97  Bacillus subtili...
NP_464371     8 YADHVGSILRTKgikdarekfqsgeitalELRKIENTEIKYIVEKqkevGLKSITDGEfrrawWHFDFLENLdgveg--- 84  Listeria monocyt...
NP_691975    11 RADHVGSLLRPErlhqarkdytngsisekELRDIQTEEIERIVDKqievGLQAVTDGEfrrlwWHTDFLEELngieg--- 87  Oceanobacillus i...
BAE05532      7 KADHVGSLLRPQrlkdarakynqneisgaELKQIEDEEIDRIIEKqleiGLHSITDGEfrrswWHFDFLENLdgveg--- 83  Staphylococcus h...
ZP_00809561   9 RADEVGSLLRPEkikearakfdkgeisasDLKKVEDMEIEKVVHKqsaiGLKLATDGEfrrswWHFDFLAKLtgcel--- 85  Rhodopseudomonas...
ZP_00523694   9 RADHVGSLLRPAalkeararrergeitaaDLTTVENAAIQQIIARqaevGLRSATDGEfrramWHFDFLERLdgves--- 85  Solibacter usita...
NP_814184     8 TVDHVGSFLRPEtikkarkkvqagalsqaELRLIEDEEIKALVAKqkagGLRGITDGEfrrgfWHIDFLEGLngvtgy-- 85  Enterococcus fae...
ZP_00322970  12 RYDEVGSLLRPEklkqardnfrnnkideyALRRVENKEIDRIVEKqveiGLKAVTDGEfrrswWHLDFLAGLngtqy--- 88  Pediococcus pent...
ZP_00204576   9 HADTVGSYLRTDawkkahadykagtisleARDAIVEEEVKKLVQAqldaGIQVVTDGEfhrswWHIDFLENLngieg--- 85  Actinobacillus p...
Feature 1                                                                                       
1XPG_B      517 gwvlsygsRCYRPpiiygtvtrpepxTLKEITYAQSLte-------kpVKGXLTGp------VTIXSWSYYre------- 576 Thermotoga maritima
NP_391775    98 ----ftpeQGIQFhnvqt----kargIKVTGDIDFSThpmle--dysfLHSIAGDat---pkMTIPSPNMLffrgkle-- 162 Bacillus subtili...
NP_464371    85 ----ydaaGGIQFskvqt----kshsVKITGPIDFTThpfie--dfifLKEAVGDnhv--akQTIPSPAMLhyrgdie-- 150 Listeria monocyt...
NP_691975    88 ----yipeKGYLFkgiet----erynIRNSGKISFPKdhsfv-kdfieFQQIVGDrav--akQTIPSPNQLfhkgtr--- 153 Oceanobacillus i...
BAE05532     84 ----ytpdHGLEFeglet----rahnVRVVDKVRYNPnhphfdhfkflYDRVNGRat---akVSIPSPNQLfhpnil--- 149 Staphylococcus h...
ZP_00809561  86 ----yhpdAGIQFsgvet----rhdsVRVIGKLDFPDdhpml-dhfrfLKRHAEIahv-tpkMTIPSPSVLhfrggrgg- 154 Rhodopseudomonas...
ZP_00523694  86 ----fhsdHGIAFkggie---tqakgLRVVGKVGFSGhpmld--hfrfLAEHTRAtp----kMTIPSPSVLhfrggrra- 151 Solibacter usita...
NP_814184    86 ---ipetgYNQTFhgkaa----paynIRVVDKISFPTqhpfl-edfsfLKEVVEVgdgtvakATIPSPTMIlrqeilsnd 157 Enterococcus fae...
ZP_00322970  89 ----fipqKGYKFqgeet----rsggIKIIDKVTYNPdhpff-rdfkyLNSIVPDgit--akQTIPSPSVLfpieqaev- 156 Pediococcus pent...
ZP_00204576  86 ----yvpeKAYAFkgvav----rpynTRCCGKVSWNPnhpfl-ehfkkFNAIVAGrav--akFTIPSPNQLmypvqw--- 151 Actinobacillus p...
Feature 1                                                                                       
1XPG_B      577 --------diPEREIAYQIALAINEEVKDLeeagiKIVQIDEPAFrekapi-------------kkskwpEYFEWAINaf 635 Thermotoga maritima
NP_391775   163 ----kdeyknDYQLFQHDVSKAYKKAIQAFydrgcRYLQLDDTAWavflsekglkqi-eafgttpdelrqLFAKSINDai 237 Bacillus subtili...
NP_464371   151 ----yqpyldDAEKFANDLATAYQKAIQAFydagcRYLQLDDTSWsylcsdeqrevv-rqrgfdpetlqeTYKNLINEai 225 Listeria monocyt...
NP_691975   154 ----npevypDIQSYAEDIISTYRDAIQAFydagcRYLQLDDVYIaglnvdelitf---eedlsrqelidLSLHVVNSvl 226 Oceanobacillus i...
BAE05532    150 ----nediypNIEDFAHDISEAYRQSLQHFydlgaRYIQIDDVYWagltdgthkvrgrqrtdeekvqareLAYKVVNDav 225 Staphylococcus h...
ZP_00809561 155 ---isqevypTLDGFFEDLAKTYRKAVRAFydagcRYLQFDDTVWaylcspaemqkv-rdrgedpdnlqqIYSRIINYai 230 Rhodopseudomonas...
ZP_00523694 152 ---vspdvypDMEAFYRDLGQAYRGAVQAFadagcRYLQLDEVNLaylcdseqrqmm-rdrgddpdrlpaVYAEMINTai 227 Solibacter usita...
NP_814184   158 gtsriqtiypEIGAFYKDLAQTYKDAIAAFyergcRYLQFDDTNWafladqtkqeel-rakgiqpeeiaqVCTTIINEal 236 Enterococcus fae...
ZP_00322970 157 ---fdeyyngDFNEFLNDTIEAYKRTVQHFydlgcRYLQLDDTSWgmwasfskgt-----lspelrpfaeATVKAINSia 228 Pediococcus pent...
ZP_00204576 152 ----dhgiyaTREEFAKDVQQAYKDAIKAFydagcRYLQIDDVYWgslcnnyqq--------ptfeadkaQAVANIQAil 219 Actinobacillus p...
Feature 1                     # #                                 #                             
1XPG_B      636 nlaanarpetQIHAHXCYSdf-----------neIIEYIHQLe-FDVISIEASrskgeIISAFENfkg--wikQIGVGVW 701 Thermotoga maritima
NP_391775   238 adr---pddlTVTMHICRGnfqstwt-aeggydaAAETIFDGlnLDGLFLEYDdsrsgGFEPLRYvkr--sdlQLVLGLV 311 Bacillus subtili...
NP_464371   226 khk---padmVITMHICRGnfrstwi-aeggygpVAETLFGKlnIDGFFLEYDnersgDFAPLKYvtr--pdlKIVLGLI 299 Listeria monocyt...
NP_691975   227 enk---pddlIVTTHLCRGnyrsawa-fegsyahIAPTLFANekVDGFFLEYDddrsgSFEPLSHipn--ggpQVVIGAI 300 Oceanobacillus i...
BAE05532    226 egl---pkdlILTTHICRGnyqstwa-isggyeaIAPYLFKEh-LHGFFLEYDdersgDFEPLRYfdk---eaYAVLGLI 297 Staphylococcus h...
ZP_00809561 231 aer---psdmTITTHVCRGnfrstwi-ssggyepVAETLLGRtnYDGYFLEYDsdragGFEPLRFlpr--gnkVVVVGVI 304 Rhodopseudomonas...
ZP_00523694 228 sgr---psdmRITMHLCRGnfrsswi-aqggyepVADLLFNQigVDGYFMEFDteragGFNPLRFvpk---gkQVVLGVV 300 Solibacter usita...
NP_814184   237 agk---pedlTVTTHICRGnhasswl-fsggyepIAKELFATn-YDGFFLEYDsdragDFSPLRHwqn--ngsKVVLGLV 309 Enterococcus fae...
ZP_00322970 229 dsk---pddlTLTMHVCKGnydshyaggvgaydsVSPYLAQLh-IDGYFLEYDdnragGFEPLKLisengrqqRVVIGIV 304 Pediococcus pent...
ZP_00204576 220 adk---padlTITTHVCRGnykssyl-legaydpIADGLFGQtnYDGYFLEYDdersgGFEPLKHfan--nkgRVVLGLI 293 Actinobacillus p...
Feature 1                                         #                       
1XPG_B      702 DIHSPAVpSINEXREIVERVLRVLpkelIWINPDCGLKTRNWDEVIPSLRNXVALAKE 759 Thermotoga maritima
NP_391775   312 TSKFGELeNPDDVKRRIEEASRNVsldqLCLSPQCGFASTEEGNKLTEEQQWAKLRHV 369 Bacillus subtilis subsp. subtilis str....
NP_464371   300 TSKTGELeDEAAIKARIEEASEIVplsqLRLSPQCGFASTEEGNILTEEEQWDKLRYV 357 Listeria monocytogenes EGD-e
NP_691975   301 TSKFGVLeDKEEIINKIKDASQYIpldqISLSPQCGFASTHQGNKLTEEDQWNKLRYI 358 Oceanobacillus iheyensis HTE831
BAE05532    298 TSKTPELeDKELIKQRIKEAQQYIsldqICLSPQCGFASTEEGNQLTEEEQWTKLKYV 355 Staphylococcus haemolyticus JCSC1435
ZP_00809561 305 TSKFGELeKKDDVKQRLAEAAKFVpleqLAVSPQCGFASTEEGNILSEDEQWAKLRLA 362 Rhodopseudomonas palustris BisA53
ZP_00523694 301 TSKTGALePVDYLERRIAEAAKFVeleqLCLSPQCGFASTEEGNSLTEDEQWAKLARI 358 Solibacter usitatus Ellin6076
NP_814184   310 TSKFPELeETEQVKARIEEAQQFVplenLSISPQCGFASTEEGNRLTEKEQWRKVQLL 367 Enterococcus faecalis V583
ZP_00322970 305 TSKRPDLeNIDFLRGRIEDASQYIalenLCISPQCGFASTEEGNRLTEDDQWNKLNLV 362 Pediococcus pentosaceus ATCC 25745
ZP_00204576 294 SSKFPELeDKEAIKARIAEAAKYVpleqLCLSPQCGFASTEEGNVMTEEQQWAKVRHV 351 Actinobacillus pleuropneumoniae serova...

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