Conserved Protein Domain Family
ABC_PotA_N

?
cd03300: ABC_PotA_N 
ATP-binding cassette domain of the polyamine transporter
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Statistics
?
PSSM-Id: 213267
Aligned: 20 rows
Threshold Bit Score: 407.008
Created: 29-Jul-2005
Updated: 2-Oct-2020
Structure
?
Aligned Rows:
  next features
Feature 1:ATP binding site [chemical binding site]
Evidence:
  • Comment:Walker A, Walker B, Q-loop, D-loop, and H-loop form the nucleotide binding site

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1                                         ## ###                                     #
AAO76398   10 IEVSHVSKFFgdk-taLDDVTLNVKKGEFVTILGPSGCGKTTLLRLIAGFQTASEGEIRISGKEITQTPPHKRPVNTVFQ 88  Bacteroides thetai...
YP_004847  18 VRLQGVRKRYgtt-vaLDGVDLEVHRGEFFSLLGPSGCGKTTLLRLLAGFETPDAGRIEIGGRDMARVPPYERPVNTVFQ 96  Thermus thermophil...
BAB76743   22 VELRNVFKFFnqe-paVHGVDLDVRQGEFFSILGPSGCGKTTTLRLIAGFEQVDAGKLLIQGQPMTNIPPYRRPVNTVFQ 100 Nostoc sp. PCC 7120
NP_229177   6 VSIKNVSKFFddf-qvLKNVSLDIKKGEFFSILGPSGCGKTTLLRVIAGFEGVESGDVLLDGKSILNLPPNKRPVNIIFQ 84  Thermotoga maritim...
CAE29601   18 LRIEAVEKRFggf-vaVDRLSLDIKAGEFFALLGPSGCGKTTLLRMLAGFETPDAGRILLNGVDIAAVLPHERPVNMMFQ 96  Rhodopseudomonas p...
YP_007870   5 IVFEHVSKKFads-iaLNDVSFAINKGEFFSLLGPSGCGKTTLLRILAGFEKPDQGRILLDGQDITKLPANKRPINTVFQ 83  Parachlamydia sp. ...
NP_104169  12 IDLESISKAYggf-kaLDGVSLRIEPGEFMTLLGPSGSGKTTTLNVVAGFTDVTSGKLLVGGKNVVGLPAHKRNIGVVFQ 90  Mesorhizobium loti...
CAD31634    7 LRLERLCKQYgsv-rgVNDLSVQIEAGEFVSFLGPSGSGKTTTLMMVAGFETPTSGQIFVGARPITGLPVPRRNIGVVFQ 85  Mesorhizobium loti
AAC65627   10 VTIDQVSKAYghc-laVDRATVHIRQGEFFSILGPSGCGKTTLLRIIAGFEQPDSGDLTFDHVSVLGVGANKRRSNTVFQ 88  Treponema pallidum...
NP_668708  15 VSFKNIKKSYdgdklvVKNLNLDIHEGDFLTLLGPSGSGKTTSLMMLAGFETPTQGEITLRDKPLHNLPPHQRGIGMVFQ 94  Yersinia pestis KIM
Feature 1                                                                                ##   
AAO76398   89 KYALFPHLNVYDNIAFGLklkktpkqTIGKKVKAALKMVGMtdyeyRDVDSLSGGQQQRVAIARAIVNEPEVLLLDEPLA 168 Bacteroides thetai...
YP_004847  97 NYALFPHMTVEANIAFGLrmkglppeAIREKVAWALELVDLlglekRYPRELSGGQKQRVALARALVLEPQVLLLDEPLS 176 Thermus thermophil...
BAB76743  101 SYALFNHLNVWDNVAFGLrlkksrksEVESRVKEALKLVKMeslrsRFPSQLSGGQQQRVALARALVNRPAVVLLDEPLG 180 Nostoc sp. PCC 7120
NP_229177  85 NYALFPHLTVFENIAFPLklkklsenEINQRVNELLSLIRMeehaqKMPSQLSGGQKQRVAIARALANEPRVLLLDEPLS 164 Thermotoga maritim...
CAE29601   97 NYALFPHLTVAANIAFGLkrarlprkEIKARVAEMLALVRLeglgkRKPDQLSGGQQQRVALARALALRPKLLLLDEPMA 176 Rhodopseudomonas p...
YP_007870  84 NYALFPHLTIWENIAFGLriaqrsetEIKREVEQMLGLIQMkehghKKPDQISGGQKQRVAIARALVNHPRILLLDEPLA 163 Parachlamydia sp. ...
NP_104169  91 HYALFPHMSVGRNVAYPLtlrgidqaERKARVTRALDMVKMgdfahRYPSELSGGQQQRVALARAIVFDPPLLLMDEPLG 170 Mesorhizobium loti...
CAD31634   86 NYALFPHLSVFENVAFALkmrrvsgsELRAGVAEALDLVQLsgyeaRMPHELSGGQQQRVALARALVFRPGVVLMDEPLG 165 Mesorhizobium loti
AAC65627   89 SYALFPHLSVYENIAFPLrlkrlsknLIRERVHEYLHLVQLdehlhKKPHQLSGGQQQRVAIARALVCEPGVLLLDEPLS 168 Treponema pallidum...
NP_668708  95 NYALFPHMTVTENLAFPLtirrlnkaDIKEKIDRILDMVKLknladRYPAQMSGGQQQRVALARALVFEPKLVLMDEPLG 174 Yersinia pestis KIM
Feature 1                                  #                                           
AAO76398  169 ALDLKMRKDMQMELKEMHKSLGITFVYVTHDQEEALTLSDTIVVMSEGKIQQIGTPIDIYNEPINSFVADFIG 241 Bacteroides thetaiotaomic...
YP_004847 177 ALDARLRQDLRVELMQLQRRLGTTFIFVTHDQEEALVMSDRIAVMRSGRIEQVGLPDEVYERPKTRFVAAFLG 249 Thermus thermophilus HB27
BAB76743  181 ALDLKLRKEMQVELSNLHKNLGLTFVMVTHDQEEALSLSDRIAVMNQGKIEQIGTPQEIYERPKTSFVADFIG 253 Nostoc sp. PCC 7120
NP_229177 165 ALDAKLRQELLVELDNLHDRVGITFIYVTHDQAEAISVSDRVALMNEGEIVQVGTPYEVYESPVNVFAATFIG 237 Thermotoga maritima MSB8
CAE29601  177 ALDKKLRESTQLELMALQKRLGMTFVIVTHDQQEAMTMADRIGVMRAGKLDQVAVPRQLYEAPASRWVAEFVG 249 Rhodopseudomonas palustri...
YP_007870 164 ALDLKLRQKMLLDLDRIHDEVGITFIFVTHDQSEAMAVSDRIAVLHKGSLEQIGNPIEIYEMPKSSFVADFIG 236 Parachlamydia sp. UWE25
NP_104169 171 ALDKKLREWLQLEIKRIHRELGTTFVYVTHDQEEALVLSDRIAVFNRGRIEQVGTGRELYDEPTTLFVGRFIG 243 Mesorhizobium loti MAFF30...
CAD31634  166 ALDKQLREHMQLELKRLQKSLGITVVFVTHDQSEALTMSDRIVVMNKGNVEQIGTPEEIYETPQTRFVAGFIG 238 Mesorhizobium loti
AAC65627  169 ALDAKLRSNLLIELDTLHDQTGITFVFITHDQSEALSVSDRIAVMNKGKILQIGTPYEIYEQPATDFVAKFIG 241 Treponema pallidum subsp....
NP_668708 175 ALDKQLREHMQLEIKQLHKMLELTIVYVTHDQSEAMTLSNRVVVFNDGIIQQMDSPSVIYEQPSNTFVAQFIG 247 Yersinia pestis KIM

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap