Conserved Protein Domain Family
ABC_ThiQ_thiamine_transporter

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cd03298: ABC_ThiQ_thiamine_transporter 
ATP-binding cassette domain of the thiamine transport system
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Statistics
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PSSM-Id: 213265
Aligned: 6 rows
Threshold Bit Score: 347.558
Created: 4-May-2005
Updated: 2-Oct-2020
Structure
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Aligned Rows:
  next features
Feature 1:ATP binding site [chemical binding site]
Evidence:
  • Comment:Walker A, Walker B, Q-loop, D-loop, and H-loop form the nucleotide binding site

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                      ## ###                                     #   
P31548      2 LKLTDITWLYhhlPMRFSLTVERGEQVAILGPSGAGKSTLLNLIAGFLTPASGSLTIDGVDHTTMPPSRRPVSMLFQENN 81  Escherichia coli
NP_104876   8 VRLDKVSFSYgeaPLTFDVAFAAAEITAIMGPSGSGKSTLLNLVAGFETPQSGGVLIGGVDVGAAPPAARPVSMVFQENN 87  Mesorhizobium loti...
NP_355645  28 VALDKIRLRLgtqNFDLDCTFPQGQVTAVVGASGSGKSTLLNLVAGFEVPDFGRVVIHGQDMAASDPSERPVSSIFQDNN 107 Agrobacterium tume...
NP_533377   8 VALDKIRLRLgtqNFDLDCTFPQGQVTAVVGASGSGKSTLLNLVAGFEVPDFGRVVIHGQDMAASDPSERPVSSIFQDNN 87  Agrobacterium tume...
NP_698743   7 IRLSDVRFSYgetAMHFDVTITGGEIAAIVGPSGSGKSTFLNLIAGFETPQSGIISINGVDVTHLPPADRPVSMVFQENN 86  Brucella suis 1330
AAP95218    2 IELNVTFDYEq-mPMHFILQVAKAQRVAVVGESGAGKSTLLNLIAGFDLATSGQILLNEVDYTFAEVADRPVSMLFQENN 80  Haemophilus ducrey...
Feature 1                                                                             ##      
P31548     82 LFSHLTVAQNIGLGLNPGLKLNAVQQGKMHAIARQMGIDNLMARLPGELSGGQRQRVALARCLVREQPILLLDEPFSALD 161 Escherichia coli
NP_104876  88 LFAHLSVEQNVGLGRSPSLRLTEVDREAIDGALARTGLGGKEKRLPRELSGGERQRVALARVLVRDRPVLLLDEPFASLG 167 Mesorhizobium loti...
NP_355645 108 LFAHLDIFTNVALGVSPGLKLRAEDRQRIEVALARVGLAGFDKRLPGTLSGGERQRAALARALVRQKPVMLLDEPFAALD 187 Agrobacterium tume...
NP_533377  88 LFAHLDIFTNVALGVSPGLKLRAEDRQRIEVALARVGLAGFDKRLPGTLSGGERQRAALARALVRQKPVMLLDEPFAALD 167 Agrobacterium tume...
NP_698743  87 LFAHLTVEQNVDLGRSPNLRLNEEDRKAVASALARVGLQGKEKRKPEALSGGERQRVAIARVLVRERPVLLLDEAFASLG 166 Brucella suis 1330
AAP95218   81 VFPHLTVEQNIGLALVPRLHLTPQQQQAVKKIAGQMGIAELLLRRADQLSGGQKQRVALARTLLQDKPILLLDEPFSALD 160 Haemophilus ducrey...
Feature 1                               #                        
P31548    162 PALRQEMLTLVSTSCQQQKMTLLMVSHSVEDAARIATRSVVVADGRIAWQG 212 Escherichia coli
NP_104876 168 PALRDDMLDLVAGVHAERGMTVLFVTHQPQDARRIGRNVVFLDNGTVAATG 218 Mesorhizobium loti MAFF303099
NP_355645 188 PGLRAGMTALLLDLHAETKNTVIIVTHHPDDIKKLAQRVVFLDRGRVVYAG 238 Agrobacterium tumefaciens str. C58
NP_533377 168 PGLRAGMTALLLDLHAETKNTVIIVTHHPDDIKKLAQRVVFLDRGRVVYAG 218 Agrobacterium tumefaciens str. C58
NP_698743 167 PALRHQMLDLVNKLRRETGMTVLMVTHTPEDALHLDALLIFLDNGKIAAQG 217 Brucella suis 1330
AAP95218  161 PIRRNELQQLVLEICRQRQLTLLMVTHQFSESEALFDRVIHIEQGRIVADQ 211 Haemophilus ducreyi 35000HP

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