Conserved Protein Domain Family
ABC_Pro_Gly_Betaine

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cd03294: ABC_Pro_Gly_Betaine 
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Statistics
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PSSM-Id: 213261
Aligned: 21 rows
Threshold Bit Score: 422.052
Created: 8-Dec-2004
Updated: 2-Oct-2020
Structure
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Aligned Rows:
  next features
Feature 1:ATP binding site [chemical binding site]
Evidence:
  • Comment:Walker A, Walker B, Q-loop, D-loop, and H-loop form the nucleotide binding site

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                   ## ###              
P14175        5 LEIKNLYKIFGehpqrafkyieqgl-skeqilektglslGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRG 83  Escherichia coli
NP_987988     6 IQVTELYKIFGkkpekayplikegf-srqeikektkqvvGLRNINFDVKRGEIFVIMGLSGSGKSTLIRCINRLIKPTFG 84  Methanococcus ma...
YP_100614     4 ITIKDLYLIFGndkqhalrmlkeek-skseilkatgctvAVKDANLSIREGEIFVIMGLSGSGKSTLLRCINRLIKPTSG 82  Bacteroides frag...
NP_632064     7 IEIKNLTKIFGknpqevlsllkggh-tkneifektkqtvGLNNINFDVYDGEIFVLMGLSGSGKSTLLRCINRLINPTSG 85  Methanosarcina m...
ZP_00186705  14 IRARGLSKVFGrqgrralelrrsgr-skaevekqtgstiGVFEASFEVCRGEIFVIIGLSGSGKSTLLRLINRLIEPTEG 92  Rubrobacter xyla...
ZP_00265117  16 LELRGVTKAYLrkgg--------------------splpAVNHVSLKVRRGEVLCLMGTSGSGKSTLLRHINRLIEPTSG 75  Pseudomonas fluo...
ZP_00006677  10 IRCEGIWKIFGrrsrqameavrsgglskteirerfdcvvGVQDASFSVKRGEIFCIMGLSGSGKSTLIRHINRLIEPTSG 89  Rhodobacter spha...
P46920       10 IKVEKVSKIFGkqtkkavqmlangk-akkeilkatgstvGVNQADFEVYDGEIFVIMGLSGSGKSTLVRMLNRLIEPTAG 88  Bacillus subtilis
NP_107673    21 LACRNVWKLFGtnaasfirerdgk--asmadvtsaglvgAVRAVDLEIRQGEIFIIMGLSGSGKSTLVRCMSRLVEPSHG 98  Mesorhizobium lo...
NP_782881     4 IKVENVYKVFGnntqkafeliekgy-gkeevlkktgcsiGVNNVNFEVEDGEFFVIMGLSGSGKSTLIRCLNRLIEPTAG 82  Clostridium teta...
Feature 1                                     #                                                 
P14175       84 QVLIDGvdiak-isdaeLREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGinaEERREKALDALRQVGLENYAHSYP 162 Escherichia coli
NP_987988    85 KIVLETgadisqmsekeLLEIRRKYFGMVFQKFGLLPNRSVLENVALGLEIQGmglEERIEKSEKALSLVGLKGWEKSKI 164 Methanococcus ma...
YP_100614    83 EVIINGrdisn-vtdkeLLRIRRKELAMVFQHFGLLPHRSVLHNIAFGLELQGvkkQEREQRAMESMQLVGLKGYENQMV 161 Bacteroides frag...
NP_632064    86 KILIDGqdisv-mdaeqLRKVRRTKLGMVFQNFALLPHRTVLDNVAYGLEIQGvpkNERYSKAVEAINTVGLKGYEDSKI 164 Methanosarcina m...
ZP_00186705  93 EVYVEGepisr-mpagrVREIRRKKMGMVFQHFGLLPNRSVLENITFGLEIQGvcaQERLRRGEEALEMVGLEGQGAKRI 171 Rubrobacter xyla...
ZP_00265117  76 EVLIEGqaisg-lshkaLRDLRSRRIGMVFQHFGLLPHRTVLDNVALPLELRGeseAVRHAAATRQLQAMGLEGWGEHYP 154 Pseudomonas fluo...
ZP_00006677  90 SVFIEGqnvna-mnardLRALRAQRIGMVFQSMALMPHRTVRDNVVFSLEVRGrpeEERARVAAQAIEAVDLTGWETKYP 168 Rhodobacter spha...
P46920       89 NIYIDGdmitn-mskdqLREVRRKKISMVFQKFALFPHRTILENTEYGLELQGvdkQERQQKALESLKLVGLEGFEHQYP 167 Bacillus subtilis
NP_107673    99 KVEFEGkdllk-isdaaLIELRRHRMGMVFQNFALLPHLNVLDNIAFPLSIQGqdrATREARAREVIELVGLHGREHFYP 177 Mesorhizobium lo...
NP_782881    83 SIYIDGediak-sddkaLREIRRKKIAMVFQNFALFPHRSILTNVEYGLEVQGigeNIRKEKALEALKLVGLGNYANSKP 161 Clostridium teta...
Feature 1                                 ##                                #                   
P14175      163 DELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQn-G 241 Escherichia coli
NP_987988   165 SELSGGMQQRVGLARGLAVNPEILLMDEPFSALDPLIRLEMQELLLKIQKKMKKTIIFITHDLNEAIKLGDRIMILNeeG 244 Methanococcus ma...
YP_100614   162 GELSGGMQQRVGLARALANDPEVLLMDEAFSALDPLIRIQMQDELLTLQSKMKKTIVFITHDLNEAIKLGDRIAIMKd-G 240 Bacteroides frag...
NP_632064   165 TQLSGGMKQRVGLARALANDPDILLMDEAFSALDPLIRNEMQDELLSLEDKLQKTIVFVSHDLDEALKLGDRIALMKd-G 243 Methanosarcina m...
ZP_00186705 172 GELSGGMKQRVGLARALATGQEILLMDEPFSALDPLIRRDMQNLFLDIQGEIRRTVVFVTHDLDEALRLGHRVAIMRd-G 250 Rubrobacter xyla...
ZP_00265117 155 HELSGGMQQRVGLARALVTDPDILLMDEPFSALDPTIRRDLQSHFLALVRERGITTLLVTHDPAEAVRLADRIAVLRq-G 233 Pseudomonas fluo...
ZP_00006677 169 DELSGGMQQRVGLARAIAADPTILLMDEPFSALDPLIRKQLQTTFMALSAELHKTTVFITHDLDEAIRIGDRIAIMKd-G 247 Rhodobacter spha...
P46920      168 DQLSGGMQQRVGLARALTNDPDILLMDEAFSALDPLIRKDMQDELLDLHDNVGKTIIFITHDLDEALRIGDRIVLMKd-G 246 Bacillus subtilis
NP_107673   178 RELSGGQQQRVGIARSLATKPEIWFLDEPFSALDPLIRREMQDELMRLQTMLHKTIVFITHDFDEAIRLADRIAIMKd-G 256 Mesorhizobium lo...
NP_782881   162 KELSGGMQQRVGLARALATDPDILLMDEAFSALDPLIRKGMQDELLQLQSKMQKTIIFITHDLDEALKLGDRIAIMKd-G 240 Clostridium teta...
Feature 1                                       
P14175      242 EVVQVGTPDEILNNPANDYVRTFFRGVDISQV 273 Escherichia coli
NP_987988   245 SLVQLSHPEEILLNPQNDFVESFVKDVDKTTV 276 Methanococcus maripaludis S2
YP_100614   241 EVVQVGTSEEILTEPANAYVERFVQSVDRSKI 272 Bacteroides fragilis YCH46
NP_632064   244 EIVQIGTPEEILTNPADNYVSQFVKGVDRSKV 275 Methanosarcina mazei Go1
ZP_00186705 251 EIVQVGNPEEILTSPADEYVERFIEDVDYAKV 282 Rubrobacter xylanophilus DSM 9941
ZP_00265117 234 RLVQSGTPKQLLETPADAEVADFFRDCLPAAP 265 Pseudomonas fluorescens PfO-1
ZP_00006677 248 VLVQIGTPEEIVTEPADEYVADFVAGISKLDL 279 Rhodobacter sphaeroides 2.4.1
P46920      247 NIVQIGTPEEILMNPSNEYVEKFVEDVDLSKV 278 Bacillus subtilis
NP_107673   257 EVIQIGTPEELVVNPATDYVAEFTRNVDRAKV 288 Mesorhizobium loti MAFF303099
NP_782881   241 VIEQIGTSEDILTNPASDYVRNFVEGVDRTKV 272 Clostridium tetani E88

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