Conserved Protein Domain Family
ABCC_CFTR2

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cd03289: ABCC_CFTR2 
ATP-binding cassette domain 2 of CFTR,subfamily C
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Statistics
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PSSM-Id: 213256
Aligned: 5 rows
Threshold Bit Score: 513.633
Created: 2-Aug-2005
Updated: 2-Oct-2020
Structure
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Aligned Rows:
  next features
Feature 1:ATP binding site [chemical binding site]
Evidence:
  • Comment:Walker A, Walker B, Q-loop, D-loop, and H-loop form the nucleotide binding site

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                             ## ###                                   
P26363    1211 GQMTVKNLSANYIDGGNTVLENISFSLSPGQRVGLLGRTGSGKSTLLSAFLRLLSTQGDIQIDGVSWQTIPLQKWRKAFG 1290 African clawed frog
P26361    1204 GEMVVKDLTVKYMDDGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRMLNIKGDIEIDGVSWNSVTLQEWRKAFG 1283 house mouse
P13569    1208 GQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGEIQIDGVSWDSITLQQWRKAFG 1287 human
XP_416011 1302 GQMTVTDLTARYTEGGTAVLENISFSISSGQTVGLLGRTGSGKSTLLFAFLRLLNTEGDIQIDGVSWNTVSLQQWRKAFG 1381 chicken
XP_687479 1209 GQIEVRNLTVKYTEAGHAVLKNLSFSAEGRQRVGILGRTGSGKSSLFNALLKLVYTDGEISIDGVNWNKMPLQKWRKAFG 1288 zebrafish
Feature 1         #                                                                            
P26363    1291 VIPQKVFIFSGSIRKNLDPYGKWSDEELLKVTEE-----------------VGLKLIIDQFPGQLDFVLLDGGCVLSHGH 1353 African clawed frog
P26361    1284 VITQKVFIFSGTFRQNLDPNGKWKDEEIWKVADE-----------------VGLKSVIEQFPGQLNFTLVDGGYVLSHGH 1346 house mouse
P13569    1288 VIPQKVFIFSGTFRKNLDPYEQWSDQEIWKVADE-----------------VGLRSVIEQFPGKLDFVLVDGGCVLSHGH 1350 human
XP_416011 1382 VIPQKVFIFSGTFRKNLDPYGQWNDEEIWKVAEEsavtvphlfflsfslwqVGLKSVIEQFPGQLDFVLVDGGCVLSHGH 1461 chicken
XP_687479 1289 VVPQKVFIFTGPLRMNLDPYGCHSDEELWRVAEE-----------------VGLKTVIEQFPDKLDFQLEYGGYVLSNGH 1351 zebrafish
Feature 1                         ##                              #                            
P26363    1354 KQLVCLARSVLSKAKILLLDEPSAHLDPITFQIIRKTLKHAFADCTVILSEHRLEAMLECQRFLVIEDNTVRQYDSIQKL 1433 African clawed frog
P26361    1347 KQLMCLARSVLSKAKIILLDEPSAHLDPITYQVIRRVLKQAFAGCTVILCEHRIEAMLDCQRFLVIEESNVWQYDSLQAL 1426 house mouse
P13569    1351 KQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEHRIEAMLECQQFLVIEENKVRQYDSIQKL 1430 human
XP_416011 1462 KQLMCLARSVLSKAKILLLDEPSAHLDPITSQVIRKTLKHAFADCTVVLSEHRLEAILECQRFLVIEDNKMRQYESIQKL 1541 chicken
XP_687479 1352 KQLICLARSILSGARILLLDEPSAHLDPVTIKVLKKTLRQSFSTCTILLSEHKVEPLLECQSFLMMDKGQVKTYDSIQKL 1431 zebrafish
Feature 1                                                            
P26363    1434 VNEKSFFKQAISHSDRLKLFplhrrnssk--rksrpqisaLQEETEEEVQDTRL 1485 African clawed frog
P26361    1427 LSEKSIFQQAISSSEKMRFFqgrhsskh----kprtqitaLKEETEEEVQETRL 1476 house mouse
P13569    1431 LNERSLFRQAISPSDRVKLFphrnsskc----kskpqiaaLKEETEEEVQDTRL 1480 human
XP_416011 1542 LSEKSSLRQAISHADRLKLLpahrrnssk--rkprpqicaLQEETEEEVQETRL 1593 chicken
XP_687479 1432 LNETSHLKQAISPAERLKLFprrnssmrtpqsklssvtqtLQEEAEDNIQDTRL 1485 zebrafish

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