1E3M,1FW6


Conserved Protein Domain Family
ABC_MutS1

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cd03284: ABC_MutS1 
Click on image for an interactive view with Cn3D
ATP-binding cassette domain of MutS1 homolog
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA structures or lesions results in ADP/ATP exchange.
Statistics
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PSSM-Id: 213251
Aligned: 17 rows
Threshold Bit Score: 350.028
Created: 27-May-2005
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
  next features
Conserved site includes 9 residues -Click on image for an interactive view with Cn3D
Feature 1:ATP binding site [chemical binding site]
Evidence:
  • Comment:Walker A, Walker B, Q-loop, D-loop, and H-loop form the nucleotide binding site
  • Structure:1E3M; Mg-ADP bound, 3.5A contacts

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                              ## ###                                 
1E3M_A    579 RITEGRHPVVEqvl--nepFIANPLNLSPqr-rXLIITGPNXGGKSTYXRQTALIALXAYIGSYVPAQKVEIGPIDRIFT 655 Escherichia coli
O66652    573 IIEEGRHPVIEefv---enYVPNDTKLDRds-fIHVITGPNMAGKSSYIRQVGVLTLLSHIGSFIPARRAKIPVVDALFT 648 Aquifex aeolicus
O51737    571 LLEKSRHPVVEhytknteiFTENFVRINKek-yFCLITGPNMAGKSTYLRQVALITLMAHIGSFVPASKALIGITDKIFC 649 Lyme disease spiro...
P74926    555 EIKGGRHPVVErft---qnFVENDIYMDNek-rFVVITGPNMSGKSTFIRQVGLISLMAQIGSFVPAQKAILPVFDRIFT 630 Thermotoga maritima
Q7UZL6    684 KIIGGRNPIVEqllt-nrkFISNDILFNNkq-kLIILTGPNASGKSCFIRQIGLIQILAQIGSFVPASKADIQIVDRIFT 761 Prochlorococcus ma...
Q7MXR7    579 DIKAGRHPVIEqqlpadepYIANDIYLDTdrqqVIIVTGPNMSGKSALLRQTALISLMAQIGSFVPAESARIGMVDSIFT 658 Porphyromonas ging...
Q9HSL6    592 HIEGGRHPVVErte---sgFVPNDTTLNDdr-rVAVITGPNMSGKSTYMRQVAVIVVLAQAGCFVPAAAAELRVVDRVFT 667 Halobacterium sali...
Q8XL87    578 KIENGRHPVVEkvip-kgeFIPNDTIINKddnqLLIITGPNMAGKSTYMRQVAIITLMCQIGSFVPASKANISVVDKIFT 656 Clostridium perfri...
Q8KCC0    593 SIRAGRHPVLErilgadepYVANDCQVGSeq-qLLIITGPNMAGKSSYLRQVGLVVLLAQVGCFVPAESAEIGLVDRIFT 671 Chlorobaculum tepidum
P49849    566 EVIEGRHPVVEkvmd-sqeYVPNNCMMGDnr-qMLLITGPNMSGKSTYMRQIALISIMAQIGCFVPAKKAVLPIFDQIFT 643 Bacillus subtilis
Feature 1       #                                  ##                                   #     
1E3M_A    656 RVGAADDLASGRSTFXVEXTETANILHNATEYSLVLXDEIGRGTSTYDGLSLAWACAENlank--ikalTLFATHYFELT 733 Escherichia coli
O66652    649 RIGSGDVLALGVSTFMNEMLEVSNILNNATEKSLVILDEVGRGTSTYDGIAISKAIVKYisek--lkakTLLATHFLEIT 726 Aquifex aeolicus
O51737    650 RIGASDNIAKGESTFLVEMNETANILRNATEKSLIIMDEVGRGTSTNDGLAIAYSIIEYiley--ikarSLFATHFHELS 727 Lyme disease spiro...
P74926    631 RMGARDDLAGGRSTFLVEMNEMALILLKSTNKSLVLLDEVGRGTSTQDGVSIAWAISEElikr---gckVLFATHFTELT 707 Thermotoga maritima
Q7UZL6    762 RIGAVDDQSTGQSTFMVEMSETASILNQATSNSLVLLDEIGRGTSTFDGLSIAWSVSEYlakk--ivcnTIFATHYHELN 839 Prochlorococcus ma...
Q7MXR7    659 RVGASDNISMGESTFMVEMQEASNILNNLTPRSLVLFDELGRGTSTYDGISIAWSIVEYihdnpkahprTLFATHYHELN 738 Porphyromonas ging...
Q9HSL6    668 RVGASDDIAGGRSTFMVEMTELASILRAATDESLVLLDEVGRGTATTDGLAIARAVTEHihda--vgatTLFATHHHELT 745 Halobacterium sali...
Q8XL87    657 RIGASDDLAGGKSTFMVEMWEVSNILKNATENSLVLLDEVGRGTSTYDGLSIAWSVIEYicknknlrckTLFATHYHELT 736 Clostridium perfri...
Q8KCC0    672 RVGASDNLTSGESTFLVEMNEAASILNNATERSLLLLDEIGRGTSTFDGMSIAWSMCEYihdq--lrsrTLFATHYHELA 749 Chlorobaculum tepidum
P49849    644 RIGAADDLISGQSTFMVEMLEAKNAIVNATKNSLILFDEIGRGTSTYDGMALAQAIIEYvhdh--igakTLFSTHYHELT 721 Bacillus subtilis
Feature 1                                                                 
1E3M_A    734 QLpekxegVANVHLDALEHGDTIAFXHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKL 793 Escherichia coli
O66652    727 ELegkiegVKNYHMEVEKTPEGIRFLYILKEGKAEGSFGIEVAKLAGLPEEVVEEARKIL 786 Aquifex aeolicus
O51737    728 SInh--qaFINLSMKIEKQGNDLVFLREVEEKPSLNSYGIYVARIAGLPLRVIDRANVIL 785 Lyme disease spirochete
P74926    708 ELekhfpqVQNKTILVKEEGKNVIFTHKVVDGVADRSYGIEVAKIAGIPDRVINRAYEIL 767 Thermotoga maritima
Q7UZL6    840 YLkhtntnVENFQVLVKQKKDQLFFCHKIEKGGANKSYGIEAAKLAGVPKEVINKAILVL 899 Prochlorococcus marinus subsp. pastori...
Q7MXR7    739 ELegqldrVHNFNVSAREVDGKMLFLRKLEPGGSAHSFGIQVARLGGMPHHIVQRATDIL 798 Porphyromonas gingivalis
Q9HSL6    746 ADadrlpdALNLHFAATRGDDGVAFEHAVRAGAATASYGVEVARTAGVPEPVVDRARELL 805 Halobacterium salinarum NRC-1
Q8XL87    737 KLegeihgVRNYSVAVKEVDNNIIFLRKIIEGGADQSYGIEVAKLAGIPDDVINRAKEIL 796 Clostridium perfringens
Q8KCC0    750 ELesrferIVNFNATVVETADTVIFLRKIVRGASDNSYGIEVAKMAGMPPEVIERAREIL 809 Chlorobaculum tepidum
P49849    722 VLedklpqLKNVHVRAEEYNGTVVFLHQIKEGAADKSYGIHVAQLAELPGDLIARAQDIL 781 Bacillus subtilis

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