Conserved Protein Domain Family
ABC_MSH4_euk

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cd03282: ABC_MSH4_euk 
ATP-binding cassette domain of eukaryotic MutS4 homolog
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA structures or lesions results in ADP/ATP exchange.
Statistics
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PSSM-Id: 213249
Aligned: 7 rows
Threshold Bit Score: 291.215
Created: 16-Mar-2005
Updated: 2-Oct-2020
Structure
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Aligned Rows:
  next features
Feature 1:ATP binding site [chemical binding site]
Evidence:
  • Comment:Walker A, Walker B, Q-loop, D-loop, and H-loop form the nucleotide binding site

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                          ## ###                      
EAL18767   556 AIHGGRHPildnl------------lgagdCIPNNVYAARgsatFQIIQGPNMSGKSTYLKQVGLLTVQAMIGCFVPAEY 623  Cryptococcus neo...
Q23405     553 SISQGRHPildwd-------------dsekTITNDTCLTRdr-rFGIITGPNMAGKSTYLKQTAQLAIMAQIGCFIPANY 618  nematode
O94065     522 TIMRSLHPilgg--------------nnsnFVANNYSCNHelsrIHVITGANMSGKSVYLRQIAYLVIMAQMGCFVPAEY 587  Candida albicans
AAL55579   611 FVIDARDPvmer--------------liknYIRNDISSTLyssrLHIITGANMTGKTAFLRQIPLLCIMAQMGSPIPAEN 676  Candida glabrata
P40965     599 LIRDSRHPllek--------------vlknFVPNTISSTKhsssLQIITGCNMSGKSVYLKQVALICIMAQMGSGIPALY 664  baker's yeast
EAK87218   793 DIRNARHPildrvdilsagtssvvtrrrgvFVPNDIYLAPge-rVCLITGPNMSGKSTLLRQIALITVMAGIGCFVPASR 871  Ustilago maydis 521
AAT12319   463 IFTDSPSMflk----------------kqkVRKNSFYACGll-nFNIVTGSNMSGKTTYTKQAAYNAIMAQIGCPVSAKF 525  Antonospora locu...
Feature 1                   #                                  ##                              
EAL18767   624 ACFTIHDALLSRLSnddsMEKCLSTFASEMAASAMILGLASPRSLVLIDELGRGTSSLEGMGLSYAIAESlirrqqsfVF 703  Cryptococcus neo...
Q23405     619 ASLPIFNRIFSRMGhndeLIRNKSAFASEMSDAAAIVQYADKNSLVVLDELARSTSTEEGIAITYAICEKvlkl-qsyTF 697  nematode
O94065     588 ARMRIFNSLYSRISsd-nVDINASSFSKEMSETAVILNDSDGDSLILIDELGRGSSLTDGFSICLAILEDlick-eatVI 665  Candida albicans
AAL55579   677 AILPVYENIHTRLCnd-sMEMTSSNFSFEMKEMAYILECCNAESLIIIDELGRGTSIGDGFAISLAILNYlskl-estTF 754  Candida glabrata
P40965     665 GSFPVFKRLHARVCnd-sMELTSSNFGFEMKEMAYFLDDINTETLLILDELGRGSSIADGFCVSLAVTEHllrt-eatVF 742  baker's yeast
EAK87218   872 ATLPIPDALLSLLTheddPTQNLSTFAAEMRTAAFILSLSSPKSLVILDEMGRGTSPEEGCAIATAVIENltdakgstVF 951  Ustilago maydis 521
AAT12319   526 ATTRVFRHILTRLSneddVSRRLSTFGVELSDTKLILDYADGDSLVLIDELGRGTNSADGMAFALAVSECliek-rsyVY 604  Antonospora locu...
Feature 1         #                                                                
EAL18767   704 FATHFQDLAVILGNLSGVVKLHLKVQHcntetlsptefgSTFAYKVAEGAap--mvHYGLEIAKLAAL 769  Cryptococcus neoformans var....
Q23405     698 LATHFLDIAALANYSNAIDNYHFLPQTde---------nSTKKHKLLRGQyr---gPLYGFELVELST 753  nematode
O94065     666 TTTHFRDIAQVLANKSCVVTAHMQTVEtn--------gqLEMKYNLVLGRnd--ivGYGIRFAEVSNL 723  Candida albicans
AAL55579   755 ISTHFDVIPMILKNKPSIRHLHMKAQIinc-------neIIKEYKASSVEitsipkIDGISCVRNIFD 815  Candida glabrata
P40965     743 LSTHFQDIPKIMSKKPAVSHLHMDAVLlnd-------nsVKMNYQLTQKSva--ieNSGIRVVKKIFN 801  baker's yeast
EAK87218   952 YATHFGELVEGLGWKEGIVCQHLNVSMvqkr----eqvdLVFHHKVHLGPgl---dTHYSLQVAKMMG 1012 Ustilago maydis 521
AAT12319   605 FITHFRELVAHLEHHSCVNVLQSSGFSifsgvc-ratngIEMASEFVPKLy----iDDALRFRRVLAM 667  Antonospora locustae

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