Conserved Protein Domain Family
ABC_UvrA_II

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cd03271: ABC_UvrA_II 
ATP-binding cassette domain II of the excision repair protein UvrA
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Statistics
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PSSM-Id: 213238
Aligned: 23 rows
Threshold Bit Score: 396.215
Created: 18-Mar-2005
Updated: 2-Oct-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
P63380       627 LTVVGAREHNLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDIlaavlan-rlngarQVPGRhtrvtgldyldkLVRVDQSP 705  Mycobacterium ...
ZP_00355972  619 LELRGCRANNLKNIDVRIPLGCFVVVSGVSGSGKSSLIGDTlaprlsq-llhggkTRAGEhdallgiehlerVVVVDQSP 697  Chloroflexus a...
AAQ66155     625 IKLFGAKGNNLQNIDVIFPLGVFICVTGVSGSGKSTLINKTlfpaisq-klyrslQDPMPydrieglkhidkIIAVDQSP 703  Porphyromonas ...
O51777       624 ILLLGSNKNNLKNIDLSIPLGVFTVITGVSGSGKSTLLNEVlypalds-rlklneKYCDGfkdivgyekidkIIQINQKP 702  Lyme disease s...
P57979       613 LKLEGATGNNLKSVNLAIPVGLFTCVTGVSGSGKSTLINDTlfplaqnalnraenTQFAPyqsisgleffdkVIDIDQSP 692  Pasteurella mu...
NP_869661    514 LTLTGATLNNLQNVTAKIPLGCLVGVSGVSGSGKSSLIVDTlypalaa-klelvaDQPGPhkrltgaqhidkLVPIDQTP 592  Rhodopirellula...
NP_662572    616 LKLKGCRGNNLKQVDAEFPLGSLISVTGVSGSGKSSLINETlypllar-hfyrskILALPcdgvegielidkVVNVDQSP 694  Chlorobium tep...
P47660       620 IIIKGAKVNNLKNINVTIPLNKLVLITGVSGSGKSSLINQTlvpaler-ilyrkgVKKDTykeiigannidkIIVVSQDP 698  Mycoplasma gen...
P56474       604 LEIKNVNINNIKNLSVQIPLKQLVCITGVSGSGKSSLILQTllptaqtllnhakkTQSLNgveivglehldkVIYLDQAP 683  Helicobacter p...
Q9PK60       598 ITLSRANKHNLKNLTVSIPLGQLTVVTGVSGSGKSSLINDTlvpcve---efieqGSCPNlavqg---klsrLVHINRDL 671  agent of mouse...
P63380       706 IGRTPRSNPATYTGVFDKIRTLFaatteakvrgyqpgrfsfnvkggrceactgdgtikiemnflpdvyvpCEVCQGARYN 785  Mycobacterium ...
ZP_00355972  698 IGRTPRSNPATYSRIFDTIRQLFaatneakargydaarfsfnvkggrcehcagegliqvemqflpdlfvpCDVCHGTRYN 777  Chloroflexus a...
AAQ66155     704 IGRTLRSNAATYTGLFTDIRALFvglpeskargykpgrfsfnvkggrcevckgngyktiemnflpdvfapCEGCRGKRYN 783  Porphyromonas ...
O51777       703 IGRTSRSNPATYVGFFTEIRELFaklpdaksrgfkagrfsfnvkggrcekcqgdgylniqmhflpdvfvpCDLCKGKKFN 782  Lyme disease s...
P57979       693 IGRTPRSNPATYTGLFTPIRELFagvpesrargynpgrfsfnvrggrceacqgdgvikvemhflpdvyvpCEQCKGKRYN 772  Pasteurella mu...
NP_869661    593 IGRTTRSCPATYAGVMDPIRQVYastreaktlgfaanrfsfnspagrcdvckgngferiemnflsdllieCSRCGGKRFN 672  Rhodopirellula...
NP_662572    695 IGRTPRSNPATYTGAFTFIRDFFtrlpeaqirgykagrfsfnvkggrcevcqgagtrkiemnflpdvyvqCEHCKGKRYN 774  Chlorobium tep...
P47660       699 IGRTPRSNPATYISVFDDIRDLFantkeakargytnsrfsfnvpggrcdkcfgdgviriemhflpdvyvkCEVCNGKKYN 778  Mycoplasma gen...
P56474       684 IGKTPRSNPATYTGVMDEIRILFaeqkeakilgysasrfsfnvkggrcekcqgdgdikiemhflpdvlvqCDSCKGAKYN 763  Helicobacter p...
Q9PK60       672 PGRSQRSISLTYIKAFDELRQLFaeqprckplgltkshfsfntpl---gacsecgglgsitamdnqdsitCPSCSGKRFL 748  agent of mouse...
P63380       786 RETLEVHYKGKTVSEVLDMSIEEAAEFFepiagvhrYLRTLVDVGLGYVRLGQPAPTLSGGEAQRVKLASELQKrstgRT 865  Mycobacterium ...
ZP_00355972  778 RETLDIRYRGLNIAEVLDLTIADALDFFarvptiaeRLQTLHDVGLDYLKLGQPAPTLSGGEAQRIKLAAELSRrsngHT 857  Chloroflexus a...
AAQ66155     784 RETLEVRYKGKSIADVLDMTINKAVEFFehaphilsKLSVLQEVGLGYIKLGQPSSTLSGGECQRVKLATELSKrdtgNT 863  Porphyromonas ...
O51777       783 EETLEVRYKGKNIHDVLEMSVFEASKFFenvpkishYLKFLIEVGLEYIKLGQSATTLSGGEAQRIKLAFELSKkstgKT 862  Lyme disease s...
P57979       773 RETLEIRYKGKTIHQVLEMTVEEAREFFdaipqiarKLQTLMDVGLSYIRLGQSSTTLSGGEAQRVKLATELSKrdtgKT 852  Pasteurella mu...
NP_869661    673 RQTLQVRFKGATIADVLGMTIDAAQEFFenvpkvhhLLASLVDVGLGYVTLGQSSTTLSGGEAQRIKLATELARpatgKT 752  Rhodopirellula...
NP_662572    775 RETLQVKYKGKSIADVLEMPIEEAALFFedfprirrILDTMQSVGLGYLKLGQPSPLLSGGEAQRIKLSAELAKiqtgKT 854  Chlorobium tep...
P47660       779 SQTLEIKYLGKSIFDVLQMSCKEAYEFFkaipnisrKLRLLCDVGLEYLQLGINVTFLSGGEAQRIKLSKFLQKkstgKT 858  Mycoplasma gen...
P56474       764 PQTLEIKVKGKSIADVLNMSVEEAYEFFakfpkiavKLKTLMDVGLGYITLGQNATTLSGGEAQRIKLAKELSKkdtgKT 843  Helicobacter p...
Q9PK60       749 PQVLEIRYKNKTIADILEMTAYEAESFFldqpsihnKIQALCTLGLQYLPLGRPLYSLSGGEIQRLKLACELSNpvkhPT 828  agent of mouse...
P63380       866 VYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLDVIKTSDWIIDLGPEGGAGGGTVVAQGTP 934  Mycobacterium tuberculosis
ZP_00355972  858 LYILDEPTTGLHLADIDRLLFVLQRLVDAGNTVLVIEHQLDLIAAADWVIELGPEGGERGGYLIGAGPP 926  Chloroflexus aurantiacus
AAQ66155     864 LYVLDEPTTGLHFEDVRVLLGILNRLIERGNTVIVIEHNLDVIRCADYLIDIGPEGGAGGGQLLYQGKM 932  Porphyromonas gingivalis W83
O51777       863 FYIIDEPTTGLHFDDIKKLLEVLQRLVSNGNTVVLIEHNLDVIKQADYIIDLGPDGGLAGGNIVVSGIP 931  Lyme disease spirochete
P57979       853 LYVLDEPTTGLHFADIKQLLTVLHRLRDQGNTIVVIEHNLDVIKTADWIIDLGPEGGNGGGQIIATGTP 921  Pasteurella multocida
NP_869661    753 FYVLDEPTTGLHFADVQRLLVVLDRLVEAGNTVLVIEHQSDLLAACDWLLDLGPGGGSQGGHLIAEGPP 821  Rhodopirellula baltica SH 1
NP_662572    855 LYILDEPTTGLHFQDIQHLLAVLRKLVEKGNTVIVIEHNLDIVRNSDWIIDLGPEGGNGGGHIVATGTP 923  Chlorobium tepidum TLS
P47660       859 LFVLDEPSTGLHLEDINKLLTIIQRIIKNGDTVVVIEHNLDIIKVADYIIDLGPEGGDNGGQIVAQGTP 927  Mycoplasma genitalium
P56474       844 LYILDEPTTGLHFEDVNHLLQVLHSLVALGNSMLVIEHNLDIIKNADYIIDMGPDGGDKGGKVIASGTP 912  Helicobacter pylori
Q9PK60       829 LYVLDEPTTGLHTHDVKQLIHVLQSLTDQGHSVVIIEHNMHVVKIADYVLELGPEGGNKGGCLIASCSP 897  agent of mouse pneumonitis
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