Conserved Protein Domain Family
ABC_putative_ATPase

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cd03269: ABC_putative_ATPase 
ATP-binding cassette domain of an uncharacterized transporter
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Statistics
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PSSM-Id: 213236
Aligned: 12 rows
Threshold Bit Score: 331.167
Created: 16-Jan-2006
Updated: 2-Oct-2020
Structure
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Aligned Rows:
  next features
Feature 1:ATP binding site [chemical binding site]
Evidence:
  • Comment:Walker A, Walker B, Q-loop, D-loop, and H-loop form the nucleotide binding site

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                          ## ###                                    #  
AAQ66076      4 LEANHIRKRYATHTALDDVSISVRKGRVFGLLGPNGAGKTSLIRIINRITAPDEGEVIFDGhpmqa-edirrIGYLPEER 82  Porphyromonas gi...
BAB80413      3 VEAQNISKTFGEVQALKDLSFVIEKGKALGLLGRNGAGKTTAIRILLGILPSDTGKVLVDNkklsf--denaFGYLPEER 80  Clostridium perf...
NP_633081     4 LEFKGVSKSFAEKNVIRDISFSVEKGEIFGLLGPNGAGKTTLIRLLLDIIKPDSGEIHVFGssltt-agkdrIGYLPEER 82  Methanosarcina m...
NP_694004     5 LHVQNLKKSFKDKQALKGISFEVHRGEIMAILGPNGAGKSTTIRNIMGIMYPDSGTIQFNYngkgi--pknkIGYLPEER 82  Oceanobacillus i...
Q58429        5 IKVENLTKYFGDKKVLDEISFEVYEGEIFGLLGHNGAGKTTTLRILAGIIEEYTGYVEVNGk----------IGYLPEER 74  Methanocaldococc...
ZP_00310075   5 LKLEAVTKIFGSYTAIESVSLSLKKNSVLGLLGPNGAGKTTLLRLITQIVLPDSGQLFFNGeqlqe-ahrtkMGYLPEER 83  Cytophaga hutchi...
YP_062276    14 VHIANFRMDFGRTTVIRDLSFDIARGETFGFLGSNGSGKTTTIRALLGIYQPTAGVLHIDGkpfap-eagerLGYLPEER 92  Leifsonia xyli s...
YP_076438     3 LQVLDVYKAFGPVRAVQGVSFTVPAGRVCGLLGSNGAGKTTTMRMIMRIFLPDRGEIQWKGrpvtd-airstFGYLPEER 81  Symbiobacterium ...
YP_120576     4 LELEGLAKRFGAVTALADVGFEVGAGEIFGFVGSNGAGKSTTMRIVLGVLAPDAGKVVFDGapvdf-avrqrFGYMPEER 82  Nocardia farcini...
AAV81117      3 LSVNNVTKRYRTVTAVDAISLDIQPGKIQALLGPNGAGKSSLVRMLVGLTQPDEGEILVENsgesieltyhdFAYLPEDR 82  Idiomarina loihi...
YP_146497     3 LEIIEVTKRFGQATAVDHLTLTVPEGEMFGLLGANGAGKTTTFRMILGLLLPTEGVIRWQGepidy-skghlIGYLPEER 81  Geobacillus kaus...
YP_181578     4 IETHGITKIYGRNVIVNDLSLSLERGQIMGLIGPNGAGKTTTIRMIMDIIKPDSGKVLILDkpmda-daqnhIGYLPEER 82  Dehalococcoides ...
Feature 1                                                                                ##     
AAQ66076     83 GLYPKMKVGEQAIYLAQLKGVNKHEARKRLTDWFEKFDIMPWWNKKVEELSKGMQQKVQFVCTVIHEPELLIFDEPFSGF 162 Porphyromonas gi...
BAB80413     81 GLYLKYTVKSQLMHFASLYGMKKKEALNSIEYWLEKFEISEYLNKKVETLSKGNKQKIQLIVAVMHDPEVIILDEPFSGL 160 Clostridium perf...
NP_633081    83 GLYKKTKILDMLVYLARLKNVPKKEAQANAEELLKSLELYEHREKRIEELSKGMQQKIQFLSSIIHDPELIILDEPFSGL 162 Methanosarcina m...
NP_694004    83 GLYKNVKVMDILLYLADLKDYPIQQAKERVLYYLKKFDLEGKENVSVEELSKGMGQKVQFIGSIIHEPDLLILDEPFSGL 162 Oceanobacillus i...
Q58429       75 GLYRDEKVVDVLKFFGELAGMKKEEIAKSIDYWLNKLKISNYKYSKIKELSKGNQQKVQFIVSVIHNPDIVILDEPFSGL 154 Methanocaldococc...
ZP_00310075  84 GLYRKMRVQEQLIYFAQLRGLSPREAKHQSRDWLKRLEIEHLQSQVLETLSKGQQQKIQFISAVVHQPELLILDEPFSGF 163 Cytophaga hutchi...
YP_062276    93 GLYKKESVIDVMVYFGRLKGLGREYARRWSREYLERVGLGEKEKIRLDKLSGGQQQKVQLGVTIMNQPKLLILDEPTKGF 172 Leifsonia xyli s...
YP_076438    82 GLYPKMQVREQLIYLTQLKGLSHAEAARQVDRWIERLELGEYALRRVEQLSKGNQQKVQFAAAAASRPELCILDEPFTGL 161 Symbiobacterium ...
YP_120576    83 GLYPKMRVAEQLRYLAQLHGLTRRDAAREVDRWCERLGLADKRERRLEELSLGNQQRAQLAAALVHRPRLLVLDEPFSGL 162 Nocardia farcini...
AAV81117     83 GLYQDRTILDNLNYIASLRGLKLSDIRSDIDSWLERFELTDRKDEPLRQMSKGNQQKVQLIATLLHDPQLVILDEPFSGL 162 Idiomarina loihi...
YP_146497    82 GLYPKLKVQEQLLYLGRLRGMKKTDILPEIDRWLERFHIRDYANKRVEELSKGNQQKIQFIAAVLHRPKLLILDEPFSGL 161 Geobacillus kaus...
YP_181578    83 GLYRKQKIIDSLVYLASLKGMNPSAARARALELLEKVGLSAHAEKKIEQLSHGMGQLVQLVSTIIHDPALMIIDEPFNGL 162 Dehalococcoides ...
Feature 1                                 #                        
AAQ66076    163 DPVNADLLKREILELAGKERTVIFSTHNMQSVEEVCDDFALINKSRVVLHG 213 Porphyromonas gingivalis W83
BAB80413    161 DPVNVELFKTVIRELLAKGKTLIFSSHRMADVEEFCDDIIMLKKGETILQG 211 Clostridium perfringens str. 13
NP_633081   163 DPVSTKTIKSKITEYRDAGRTVILSTHMMEQAQKLCDRILMLNKGQQVLYG 213 Methanosarcina mazei Go1
NP_694004   163 DPVSQDIFKDEISQLAANGTAILLSSHQMNLVEEMCDRLFMIQNGQKVIYG 213 Oceanobacillus iheyensis HTE831
Q58429      155 DVVNVRLLRDIIFELKEEGKTIILSTHQLEKIERLCDRVLILKKGKAVHYG 205 Methanocaldococcus jannaschii
ZP_00310075 164 DPANAEVIKKEIQALQRSGTTIIYSTHRMDTVEDVCTELVLINQAKIVLQG 214 Cytophaga hutchinsonii
YP_062276   173 DPVNRRLLMDIIDDQKRAGSTVMMVTHQMEEVERLCDRVILLKDGVSRAYG 223 Leifsonia xyli subsp. xyli str. CTCB07
YP_076438   162 DPMNTLVMEQAFRTLAREGTTILFSSHNMDQVEALCDDVVLLHRSRVVLAG 212 Symbiobacterium thermophilum IAM 14863
YP_120576   163 DPVAVDVMSEVLREQADAGVPVLFSSHQLDLVQRLCDRVGIIVAGRMRAVG 213 Nocardia farcinica IFM 10152
AAV81117    163 DPVNQEHVLTVLNELRERGKTVVLSAHQMELVERLADTMLLMNKGRAVAQG 213 Idiomarina loihiensis L2TR
YP_146497   162 DPVNVELLKEAVLDLKRNGTTIVFSSHRMEHVEELCEHVCILRRGRAVVAG 212 Geobacillus kaustophilus HTA426
YP_181578   163 DPVNVQLVKDLMMELRSQNKSLILSTHRMNEVEEMCDRVCMLNKGQQVLYG 213 Dehalococcoides ethenogenes 195

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