Conserved Protein Domain Family
ABC_NatA_like

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cd03267: ABC_NatA_like 
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein.
Statistics
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PSSM-Id: 213234
Aligned: 10 rows
Threshold Bit Score: 375.132
Created: 29-Jul-2005
Updated: 2-Oct-2020
Structure
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Aligned Rows:
  next features
Feature 1:ATP binding site [chemical binding site]
Evidence:
  • Comment:Walker A, Walker B, Q-loop, D-loop, and H-loop form the nucleotide binding site

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                               ## ###                  
NP_970315     5 IETTDLSRVYqtyqkpegfinslkgfvnrkhvskvALDKTTLKIESGQIVGLVGANGAGKTTLLKMLSGLVTPTSGDARV 84  Bdellovibrio bac...
NP_622786     6 IEVANLTKIYrrqvkeagliesvksifkplyeeveALRGVSFNVGEGEIVRYIGPNGAGKTTTLKILAGVLFPTEGEVRV 85  Thermoanaerobact...
ZP_00386703   2 IEIDQLSFDYrtfskepglkgalqdifhrkyqlvpALKDLNLTIKDGEIIGLIGPNGAGKTTLTKLLTGIIQPTSGSVKV 81  Lactobacillus de...
NP_893093     6 IQVENLSKSFdisskepglkgtlkhffkrekksieVIKNINFGIKKGEIVGFLGANGAGKTTILKILCGLIHPSQGRLSV 85  Prochlorococcus ...
BAD75772      2 IRVSHLHKSFrvhrreagwleaarslwrrdyrvieAVKDVSFTIEKGEIVGFLGPNGAGKTTTMKMLAGLLHPTSGEITV 81  Geobacillus kaus...
ZP_00170911   4 ILVSQLRKTYriherdpgvlgalralvrpryrtveALAGVSFELERGELLGFIGPNGAGKSTTIKILSGILRPDSGRVEV 83  Ralstonia eutrop...
AAF09790     47 IEVRHLCKSFar---------------------kpAVQDISFSIPAGEIVGYLGPNGAGKSTTIKVLTGLLVPDSGEVRV 105 Deinococcus radi...
YP_192549    11 ITVSNLRKTYrireggsw---------rgktrdivALDGISFSVPKGQIAGFIGPNGAGKSTAIKILSGILRPTSGEVQV 81  Gluconobacter ox...
CAB88835     38 IELDGVEKVFdvrrktgfl--------krerrqvrAVDGLSFTVSRGEMVGYIGPNGAGKSTTIKMLTGILTPSGGRLRV 109 Streptomyces coe...
CAD78260     32 IEVRDLTKKYrvyqkregiggsirglfhrefrevtAVRGIDLQVEQGEFVAFLGPNGAGKTTTLKLLSGVIQPTSGTASV 111 Rhodopirellula b...
Feature 1                            #                                                          
NP_970315    85 LGFRPWERKNEFLRQISILLGQk---nQLWWDISPADSYSLLARIYDLDPAQARKRVEHLAEMLQCTHVLHTQLRRLSLG 161 Bdellovibrio bac...
NP_622786    86 LDEIPYKRSKKFLSKISFIMASrgfleEVAWDLPVLDGFYFIKEIYNLSYSEYKNRVDKLSEMMKIEDILKSPVRNLSHG 165 Thermoanaerobact...
ZP_00386703  82 AGLIPGSRQKKLLRQIGVMFGQk---sQLSWNLPAVDTLNMLAAIYQLKPDHYQARLRELCDLLDIGEIVKTPVRKLSLG 158 Lactobacillus de...
NP_893093    86 AGNLPYKRRSNFLKNITLIMGQk---qQLIWDLPPIESFYLNAAIYDIEKFEAKKRIKKLSDMLEIEKELYIPVRKLSLG 162 Prochlorococcus ...
BAD75772     82 GGFVPFEQKPEFKKMMSLVMGQk---sQLIWDIPPMETFLVNKAIYDIDDRAFRQTLEELTELLDLAPLLDKPTRSLSLG 158 Geobacillus kaus...
ZP_00170911  84 NGRVPFDDRERHVARIGVVFGQr---tQLWWDLPVGDGFALLRDIYRLDPVRFGRTRDELVALLNLERLLDQPVRQLSLG 160 Ralstonia eutrop...
AAF09790    106 GGLVPWKQRRQHVARLGAVFGQr---tTLWWDLPVRESLELLRHVYRVPAARFAENLAGFTELLELGPFLNTPARALSLG 182 Deinococcus radi...
YP_192549    82 NGLVPWTNRIAHVARIGVVFGQr---tQLWWDLSVAEGLALLRDIYGVEPERFTRNRARLADALDLGAIMDQSVRQLSLG 158 Gluconobacter ox...
CAB88835    110 AGIDPSRERIRLAHRIGVVFGQr---tTLWWDLPLIDSYRLMHRMYRIPDARYRENLDRCVELLQLQELLDVPVRQLSLG 186 Streptomyces coe...
CAD78260    112 MGYVPWERKDGYRRRFALVMGQk---nQLWWDLPARESYRLHQHIYGIPEGEFKTRLDEISDLLDVTRLLDQPVRELSLG 188 Rhodopirellula b...
Feature 1                           ##                                #                        
NP_970315   162 ERMKMEIIGALLHEPKILFLDEPTIGLDIVAQETIREFLDQYVKEKEPTVILTSHYMDDIAKLADKLLLISKGHIVYQG 240 Bdellovibrio bact...
NP_622786   166 QRKKAEIVANLLWEPKLILLDEPTLGLDIFSQNELHNFLKEYVKDYKATVMLTSHNMKDIEKCASRVIMIDKGRKLYDG 244 Thermoanaerobacte...
ZP_00386703 159 QRIRCELACSLIHEPSYLFLDEPTIGLDLLTQEKIYNFLKTENRLHQTTIILTSHNVRDIEALAQRLLILSKGELIFND 237 Lactobacillus del...
NP_893093   163 QRMKSELLAALIHKPNILFLDEPTLGLDINAQRNLRKFLQIYNKDTDATICLTSHYMKDITSLCKRVLCIHEGCLTYDG 241 Prochlorococcus m...
BAD75772    159 QRMRCELAAALLHRPQVLFLDEPTIGLDVHTQENVRRFIVDYNREHETTILLTSHYMGDVAALCDRVMIINYGRLIYDG 237 Geobacillus kaust...
ZP_00170911 161 QRMRAEIAAALLHEPDILFLDEPTIGLDAPSKLAVRDFIRRANRERGTTVLLTTHDMHDIEALARRVIVIGHGRVLADC 239 Ralstonia eutroph...
AAF09790    183 QRMRADLAAALLHDPELLFLDEPTVGLDVVAKERIREFVKAVNAERGVTVLLTTHDLGDVERLARRVMMIDTGRLLFDG 261 Deinococcus radio...
YP_192549   159 QRMRAEIAASLIHDPDILILDEPTIGLDAPSKLAVRAFVHELCRDRGTTVLLTTHDMHDIEALAERVIVIGHGRILADS 237 Gluconobacter oxy...
CAB88835    187 QRMRGDIAAALLHDPEVLYLDEPTIGLDVVSKAKVRGFLLDLNAERGTTVLLTTHDLQDIEQLCSRVMVIDHGRLMYDG 265 Streptomyces coel...
CAD78260    189 ERMKMELIAALLHSPEVLFLDEPTIGLDVIAQHNIQKFLRYYQEKRKITILLTSHYMKDVAALCRRVVVIAQGTIQYDG 267 Rhodopirellula ba...

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