Conserved Protein Domain Family
ABC_NikE_OppD_transporters

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cd03257: ABC_NikE_OppD_transporters 
ATP-binding cassette domain of nickel/oligopeptides specific transporters
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Statistics
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PSSM-Id: 213224
Aligned: 93 rows
Threshold Bit Score: 204.662
Created: 19-Jan-2005
Updated: 2-Oct-2020
Structure
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Aligned Rows:
  next features
Feature 1:ATP binding site [chemical binding site]
Evidence:
  • Comment:Walker A, Walker B, Q-loop, D-loop, and H-loop form the nucleotide binding site

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                    ## ###                             
P33594        3 LLNISGLSHHYahggfngkhqhqavLNNVSLTLKSGETVALLGRSGCGKSTLARLLvgl----espAQGNISWRGeplak 78  Escherichia coli
NP_602464     4 VLSIKNLNKTFesg---------fkLKDINFDIKEGEVVSLIGESGSGKTSISKIIval-----lkAKGQILFKGmdile 69  Fusobacterium nu...
NP_296851     5 LLKIENLVVAIkesn-------qrlVNHLSLTIKQRQSLALVGENGSGKTTVSKAIlgflpdncciQSGKIFYSGtditr 77  Chlamydia murida...
NP_892313     8 ILEIRNLNVKYgpyq-------kstIKNFKLDLFKGDHLAIIGPSGCGKTTFAKTIvnmlp-egsiTQGFIKISGedltk 79  Prochlorococcus ...
AAP77012    303 ILQIHDLSISMasn---------nlVSHLNLSIKCGECVALLGKSGSGKSISALALqgflasnlsqTSGKIMLDDkvinp 373 Helicobacter hep...
NP_907344   329 LLNLENITHHYgsf---------qaLQGLSLRLLHGEIYSLVGASGSGKSTLAWIAagv----lkpTQGRRTPKEgl--- 392 Wolinella succin...
ZP_00144326   3 ILKIKNLNLRIhek---------eiLKNISFEIEEGEIIGLIGESGSGKTIFTKYIlgilpiaahfTQESFEVVPk---- 69  Fusobacterium nu...
YP_087655     5 IIRFDNFSIENpdsd-------rplIAPLNLTLPPYRTLALVGESGSGKTLLGRSIlgllp-eqlnTTGNIYFQDkkiis 76  Mannheimia succi...
ZP_00134075   3 LLRIENVGVKTttg--------ltlVEPISLSLEQGKNITILGETGSGKSLLIQAImgalp-egleASGQIFVENgkten 73  Actinobacillus p...
NP_764615     1 MIQFDHVDYSYhrk--------qpvLKDINISIQRGEKIGVLGESGAGKSTIGSLIlgq----lkpTKGKISIDSg---- 64  Staphylococcus e...
Feature 1                                     #                                                 
P33594       79 lnra-------------qrkafrrdIQMVFQDSiSAVNPRKTVREILREPMrhllslkkseqlaras--emlkavdldds 143 Escherichia coli
NP_602464    70 np-----------------kkisgkIQMIFQSPySSLNPKYKIKDIILEGViyqkvlkkeenideyl-lnilnevgldke 131 Fusobacterium nu...
NP_296851    78 lsrk------------efqsirgkkISTIFQNAmGTLTPSMRVGTQIIETLrhhfvmskeeafakarellvsvhiespdr 145 Chlamydia murida...
NP_892313    80 idkk------------qiqlfrrnnFGFIYQDSiKKLNPLMTVGDHLKELFkthfqnyppliikdlv-eenfrkvgidie 146 Prochlorococcus ...
AAP77012    374 s------------------fyrslaFSCIMQNPrTCFNPLLSIAHHFKETLkslhkpynqpfivq-----clqesgldkq 430 Helicobacter hep...
NP_907344   393 ------------------------rIGMVYQNPlLALSPRLSILESLLEPLrlakippkeaedqafe-lakaaglkadlh 447 Wolinella succin...
ZP_00144326  70 -------------------------IGAIFQNAfTSLNPTVKIRKQLQHLYishygnkknwkekies-lledvgldkkkn 123 Fusobacterium nu...
YP_087655    77 vtgtptvddkqktneiatleirgkaVSFIMQNAiNAFDPLFSLQDQFCETLqkhtalsyrqalikaq--qsvskvklssa 154 Mannheimia succi...
ZP_00134075  74 mql---------------eslwgrtLVMLPQEPrRSLDPIMTIGKQLWESFtfvakkdkqaakneg---kkalehlglka 135 Actinobacillus p...
NP_764615    65 ------------------------kVLPIFQHAtESFDRQFTIEQSLREPLlfyrqlipqnikniil--nyliefnlstd 118 Staphylococcus e...
Feature 1                                       ##                                #             
P33594      144 vldkRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQqqfgtACLFITHDLRLVerFCQRVM 223 Escherichia coli
NP_602464   132 vlnkYPHELSGGQRQRVAIARAVAVKPDLIIADEILTALDALTQIQILELFQKLKenkkiSYLFISHDINVVkkISDRLL 211 Fusobacterium nu...
NP_296851   146 clqlYPFELSGGMCQRVSIAIALATNPELIIADEPSTALDSISQAQVLRVLKQIHqnnntALLLITHNLALVseLCEEMA 225 Chlamydia murida...
NP_892313   147 rldsFPHQFSGGMRQRVSIAMALALKPKILIADEPSTSLDSKTSFEVMNQILCLCeksgtTLVLISHDINLAakWCKKVV 226 Prochlorococcus ...
AAP77012    431 vldmYPFELSGGMLQRVMIALALLTQAPFLIADEPSSDLDKDIAFEILKTLRELQqqrglGILLITHDLRVVayMAQYVY 510 Helicobacter hep...
NP_907344   448 llkrYPHELSLGTLQRACIARALANSPELLIADEPTSALDPSVQACVIKTLLELQverglSVLFITHHLALArkISDRIG 527 Wolinella succin...
ZP_00144326 124 fldkYPHELSGGEQQRIVIMGALIGEPNFLIADEVTTALDVETKIEIINFFKKLQkkfkiSILFITHDLSTLkdFADKIY 203 Fusobacterium nu...
YP_087655   155 llkrLPSQLSGGQLQRMMLALTFALEPELVIADEPTSALDSLTQFELLPLFKQMAke--rSMIFITHDLALVqeLADDIA 232 Mannheimia succi...
ZP_00134075 136 wetaYPHQLSGGMAQRASFAVATAAGGKILLADEPTKGLDPKSKANVIQLLKQAYqq-qgGLLTITHDIDVAeqLGGEIL 214 Actinobacillus p...
NP_764615   119 litkFPQEVSGGQLQRLNIIRSLLAQPDILVCDEITSNLDVMAEQNVINILLNEKniqnkTLIVISHDLSVLqrLTNRII 198 Staphylococcus e...
Feature 1                  
P33594      224 VMDNGQIVETQ 234 Escherichia coli
NP_602464   212 IIKDGEIIESG 222 Fusobacterium nucleatum subsp. nucleatum ATCC 25586
NP_296851   226 IIHHGEIVEQG 236 Chlamydia muridarum Nigg
NP_892313   227 IMDQGSIQEQG 237 Prochlorococcus marinus subsp. pastoris str. CCMP1986
AAP77012    511 VMDKGKIIEEV 521 Helicobacter hepaticus ATCC 51449
NP_907344   528 LLHEGKLSYEG 538 Wolinella succinogenes DSM 1740
ZP_00144326 204 VMYHGEIIDEN 214 Fusobacterium nucleatum subsp. vincentii ATCC 49256
YP_087655   233 VLKRGEIVEFR 243 Mannheimia succiniciproducens MBEL55E
ZP_00134075 215 VMKKGQLLEKG 225 Actinobacillus pleuropneumoniae serovar 1 str. 4074
NP_764615   199 VIKDGQIVDDF 209 Staphylococcus epidermidis ATCC 12228

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