Conserved Protein Domain Family
ABCC_ATM1_transporter

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cd03253: ABCC_ATM1_transporter 
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Statistics
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PSSM-Id: 213220
Aligned: 21 rows
Threshold Bit Score: 414.32
Created: 5-Aug-2005
Updated: 2-Oct-2020
Structure
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Aligned Rows:
  next features
Feature 1:ATP binding site [chemical binding site]
Evidence:
  • Comment:Walker A, Walker B, Q-loop, D-loop, and H-loop form the nucleotide binding site

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                             ## ###                  
P40416    436 ITFENVTFGYhpd--------------------rkiLKNASFTIPAGWKTAIVGSSGSGKSTILKLVFRFYDPESGRILI 495 baker's yeast
O14286    443 IQFDNVHFSYnpn--------------------rpiLNGCSFNIPAGAKVAFVGASGCGKSTILRLLFRFYDTDSGKILI 502 fission yeast
NP_344324 452 IRFEHVYFGYdph--------------------fpvIKDINIGIKPGEKVAIVGKSGSGKSTIAKLLLRFYDVNEGRILI 511 Sulfolobus solfata...
AAZ06364  445 VAFENVRFAYppsplrpgslpsktgddekpeasrmlLDDVSFSVDAGKKVAIVGPSGVGKSTLIKLLFRMFDPASGTVRI 524 Toxoplasma gondii
AAT47883  363 VRFNNVRFAYgdg--------------------nqiLNGIDFSIRPGERVAIVGGSGSGKSTLAKLLFRFYDPQEGSVQV 422 Oikopleura dioica
EAN80637  470 IELRDVCFAFktggd-----------------drfvLRNLSLAIPGGSTVAFVGPSGSGKSTIFRLIYRFYDPLSGSVLI 532 Trypanosoma brucei
XP_324386 449 IEFKDVTFGYhpe--------------------spiLRDLSLTIPAGKKVAIVGPSGCGKSTLLRLLFRFYDPQKGAIYI 508 Neurospora crassa
EAL19078  466 IEFRNVAFAYhpe--------------------rpiFRDLSFKIPAGQKVAIVGPSGCGKSTVFRLLFRFYDSSSGQILI 525 Cryptococcus neofo...
BAD44784  482 IEFENVHFGYvpe--------------------rkiLKGATFTVPAGKSVAIVGTSGSGKSTILRLLFRFFDSSSGSIRI 541 Japanese rice
AAL74252  460 IVFRDISFKYnds--------------------vqvLNNVSFECEGGKRIAIVGSSGSGKSTLLRLLYRFYDVSSGSIEI 519 Dictyostelium disc...
Feature 1                          #                                                          
P40416    496 NGRDIKEYDIDALRKVIGVVPQDTPLFNDTIWENVKFGRIDAtdeevitvVEKAQLAPLIKKLPQGFDTIVGERGLMISG 575 baker's yeast
O14286    503 DNQRLDQITLNSLRKAIGVVPQDTPLFNDTILYNIGYGNPKAsndeiveaAKKAKIHDIIESFPEGYQTKVGERGLMISG 582 fission yeast
NP_344324 512 DGIDIREIDLNYLRRKVAYVPQDVVLFDTTVGYNVAYGTDNVseidiiraCKIAKIHDEIVKLPFAYDTILGERGTYLSG 591 Sulfolobus solfata...
AAZ06364  525 DDQDVKELDLHSFRRQIGVVPQDMVLFNDTIEFNIKYGCPSAtdeemraaAKQAEIDDVIMRMPQGYSTVVGERGLKLSG 604 Toxoplasma gondii
AAT47883  423 NGEDIRDYNLKSFRERIGVVPQDCVLFNDTIYNNIRYGNLNAteeqiieaAKVADLHRSVEEMNFGYDTIVGERGVKLSG 502 Oikopleura dioica
EAN80637  533 DGQPLTDLQIPSFRESIGVIPQDTVLFNESLRYNICYGRPDAteeemiraAKVACIHDSIMNMSDKYDTVVGERGLKLSG 612 Trypanosoma brucei
XP_324386 509 DGQDIRSVTLESLRRAIGVVPQDTPLFNDTVEHNIRYGNLSAtpeqvieaAKAAHIHEKIISWRDGYNTKVGERGLMISG 588 Neurospora crassa
EAL19078  526 DGQDIKTVTLDSLRRSIGVVPQDTPLFHADILHNIRYGNLEAtdeqvyeaARKAHVEGTIQRLPEKYATKVGERGLMISG 605 Cryptococcus neofo...
BAD44784  542 DGQDIREVTLDSLRKCIGVVPQDTVLFNDTIKHNIQYGRLSAtdeevydvARRAAIHDTIMNFPDKYNTVVGERGLKLSG 621 Japanese rice
AAL74252  520 DGQDIRGIQLESLRKHIGVVPQDTVLFNDTIYYNIAYGNPNAtkeqvenaARAAHIHEVILNMKNGYDTVVGERGLKLSG 599 Dictyostelium disc...
Feature 1                          ##                                     #                   
P40416    576 GEKQRLAIARVLLKNARIMFFDEATSALDTHTEQALLRTIRDNfts-----gsrTSVYIAHRLRTIADADKIIVLDn-GR 649 baker's yeast
O14286    583 GEKQRLAVSRLLLKNPEILFFDEATSALDTNTERALLRNINDLikg-----shkTSVFIAHRLRTIKDCDIIFVLEk-GR 656 fission yeast
NP_344324 592 GQRQRLSIARAIIKNPDVLIFDEATSNLDVTSEREVYETMIDVsk-------gkTVIMITHNVHEVMNSDKVIVLSn-GK 663 Sulfolobus solfata...
AAZ06364  605 GERQRIGIARCLLRNPAIAVFDEATSALDSHTEQKILKAFRAMar-------grTTLVIAHRLSTISDADKIIYLKe-GK 676 Toxoplasma gondii
AAT47883  503 GEKQRLAIARCFLKDPEIVIYDEATSSLDSLTEQLSFQRILSSldka---tenkSLLVIAHRLSTIVNSDKIIVLKd-GK 578 Oikopleura dioica
EAN80637  613 GEKQRIAIARVVLSNPPILLADEATAALDSVTEMHVMQQLRDAggk------rrTLILIAHRLTSIMSADKIFVLDgkGS 686 Trypanosoma brucei
XP_324386 589 GEKQRLAVSRLILKDPPLLFFDEATSALDTHTEQALMENINAIlkglgqkgekkTSLFVAHRLRTIYDSDLIIVLKe-GR 667 Neurospora crassa
EAL19078  606 GEKQRLAVARVLLKDPPVLFFDEATSALDVYTETELMRNINSIltg-----qgkTSVFIAHRLRTISDADLIIVLQd-GY 679 Cryptococcus neofo...
BAD44784  622 GEKQRVSIARVFLKEPSILLCDEATSALDSTTEASILNSLKTLsv-------drTSIFIAHRLTTAMQCDEIIVLEn-GE 693 Japanese rice
AAL74252  600 GEKQRVSIARAILKDSPIVFYDEATSSLDTEKEKLIMDALRELfk-------grTTIMIAHRLSTIVDADEIIVLGt-GG 671 Dictyostelium disc...
Feature 1                              
P40416    650 VREEGKHLELlampgSLYRELWTIQ 674 baker's yeast
O14286    657 VVEQGSHEQLma-knSVYTSMWHSQ 680 fission yeast
NP_344324 664 VVEEGKPIELln-kkGEFYKMFKEQ 687 Sulfolobus solfataricus P2
AAZ06364  677 IAEMGTHAELlekerGLYRALWESQ 701 Toxoplasma gondii
AAT47883  579 VAEMGNHAELla-lnNHYRKMWDIQ 602 Oikopleura dioica
EAN80637  687 LSESGTHEELlq-rgGLYSELWSKQ 710 Trypanosoma brucei
XP_324386 668 VAEQGTHRELme-rnGVYAQLWRAQ 691 Neurospora crassa
EAL19078  680 VAEQGTHEQLlampgGVYHGLWQAQ 704 Cryptococcus neoformans var. neoformans B-3501A
BAD44784  694 VVEQGPHDFLls-kgGRYAELWSQQ 717 Japanese rice
AAL74252  672 IILERGNHQQlleleGKYRSMWLAQ 696 Dictyostelium discoideum

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